RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	YPL068C	Q02749	293 aa		4.38	□□□□□ -1.71
DEG1	YFL001W	AIM33	Q04516	312 aa		4.38	□□□□□ -1.71
DEG1	YFL001W	FMP42	Q04991	504 aa		4.38	□□□□□ -1.71
DEG1	YFL001W	YPL199C	Q08954	240 aa		4.38	□□□□□ -1.71
DEG1	YFL001W	NCA2	Q12374	616 aa		4.38	□□□□□ -1.71
DEG1	YFL001W	TPK3	P05986	398 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	GAL7	P08431	366 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	RPS16A	P0CX51	143 aa	Known RBP	4.37	□□□□□ -1.71
DEG1	YFL001W	RPS16B	P0CX52	143 aa	Known RBP	4.37	□□□□□ -1.71
DEG1	YFL001W	ATR1	P13090	542 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	SAM2	P19358	384 aa	Known RBP	4.37	□□□□□ -1.71
DEG1	YFL001W	PMU1	P36069	295 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	CAB3	P36076	571 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	YHR131C	P38835	850 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	END3	P39013	349 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	PRP39	P39682	629 aa	Known RBP	4.37	□□□□□ -1.71
DEG1	YFL001W	LYS12	P40495	371 aa	Known RBP	4.37	□□□□□ -1.71
DEG1	YFL001W	AIP1	P46680	615 aa	Known RBP	4.37	□□□□□ -1.71
DEG1	YFL001W	SFH5	P47008	294 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	RTT101	P47050	842 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	YGR117C	P53270	476 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	SCW4	P53334	386 aa	Known RBP	4.37	□□□□□ -1.71
DEG1	YFL001W	RRN9	P53437	365 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	PIR3	Q03180	325 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	YMR111C	Q04461	462 aa	Predicted RBP	4.37	□□□□□ -1.71
DEG1	YFL001W	ECM18	Q04623	453 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	ARR1	Q06596	294 aa		4.37	□□□□□ -1.71
DEG1	YFL001W	CDC23	P16522	626 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	YCR043C	P25361	127 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	PUT3	P25502	979 aa	Predicted RBP	4.36	□□□□□ -1.71
DEG1	YFL001W	SWC5	P38326	303 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	MTC4	P38335	694 aa	Known RBP	4.36	□□□□□ -1.71
DEG1	YFL001W	YHR218W	P38899	603 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	FAA2	P39518	744 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	YND1	P40009	630 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	YHC3	P47040	408 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	YDL186W	P48568	277 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	AZR1	P50080	613 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	YMR181C	Q03231	154 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	ERP1	Q05359	219 aa	Known RBP	4.36	□□□□□ -1.71
DEG1	YFL001W	YLR413W	Q06689	675 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	GLE1	Q12315	538 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	YDR262W	Q12331	272 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	YOP1	Q12402	180 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	SPO24	Q3E752	67 aa		4.36	□□□□□ -1.71
DEG1	YFL001W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
DEG1	YFL001W	CLN3	P13365	580 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	RNA14	P25298	677 aa	Known RBP	4.35	□□□□□ -1.71
DEG1	YFL001W	YEF1	P32622	495 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	VAM7	P32912	316 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	MET30	P39014	640 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	YMR134W	P40207	237 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	YIL169C	P40442	995 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	TES1	P41903	349 aa	Known RBP	4.35	□□□□□ -1.71
DEG1	YFL001W	CAF40	P53829	373 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	CAB5	Q03941	241 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	BCH1	Q05029	724 aa		4.35	□□□□□ -1.71
DEG1	YFL001W	RRP12	Q12754	1228 aa	Known RBP	4.35	□□□□□ -1.71
DEG1	YFL001W	SUP35	P05453	685 aa	Known RBP	4.34	□□□□□ -1.71
DEG1	YFL001W	RPL15A	P05748	204 aa	Known RBP	4.34	□□□□□ -1.71
DEG1	YFL001W	RPL20A	P0CX23	172 aa	Known RBP	4.34	□□□□□ -1.71
DEG1	YFL001W	RPL20B	P0CX24	172 aa	Predicted RBP	4.34	□□□□□ -1.71
DEG1	YFL001W	MSS116	P15424	664 aa	Known RBP	4.34	□□□□□ -1.71
DEG1	YFL001W	CKI1	P20485	582 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	SLY1	P22213	666 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	MRPL8	P22353	238 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	YCL068C	P25593	260 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	SEC1	P30619	724 aa	Known RBP	4.34	□□□□□ -1.71
DEG1	YFL001W	BZZ1	P38822	633 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	RIB4	P50861	169 aa	Predicted RBP	4.34	□□□□□ -1.71
DEG1	YFL001W	DBP6	P53734	629 aa	Known RBP	4.34	□□□□□ -1.71
DEG1	YFL001W	SPR6	Q01684	191 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	SNA4	Q07549	140 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	RAX1	Q08760	435 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	AYT1	Q12226	474 aa		4.34	□□□□□ -1.71
DEG1	YFL001W	POM152	P39685	1337 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	YLL053C	P0CD98	152 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	EXG1	P23776	448 aa	Known RBP	4.33	□□□□□ -1.72
DEG1	YFL001W	MCR1	P36060	302 aa	Known RBP	4.33	□□□□□ -1.72
DEG1	YFL001W	RIB5	P38145	238 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	MIX23	P38162	196 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	YBR137W	P38276	179 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	RTC2	P38279	296 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	RPR2	P40571	144 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	GCD14	P46959	383 aa	Predicted RBP	4.33	□□□□□ -1.72
DEG1	YFL001W	SPO19	Q03029	223 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	CCE1	Q03702	353 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	SMP3	Q04174	516 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	RRG8	Q06109	277 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	SRL1	Q08673	210 aa		4.33	□□□□□ -1.72
DEG1	YFL001W	MRPL23	Q12487	163 aa	Predicted RBP	4.33	□□□□□ -1.72
DEG1	YFL001W	RAD9	P14737	1309 aa		4.32	□□□□□ -1.72
DEG1	YFL001W	SSC1	P0CS90	654 aa	Known RBP	4.32	□□□□□ -1.72
DEG1	YFL001W	CAP2	P13517	287 aa		4.32	□□□□□ -1.72
DEG1	YFL001W	ATS1	P31386	333 aa		4.32	□□□□□ -1.72
DEG1	YFL001W	YPS1	P32329	569 aa		4.32	□□□□□ -1.72
DEG1	YFL001W	CHK1	P38147	527 aa		4.32	□□□□□ -1.72
DEG1	YFL001W	CDC40	P40968	455 aa	Predicted RBP	4.32	□□□□□ -1.72
DEG1	YFL001W	PNC1	P53184	216 aa	Known RBP	4.32	□□□□□ -1.72
DEG1	YFL001W	IBD2	P53892	351 aa		4.32	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 38.9 ms