RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C GLT1Q12680 2145 aaKnown RBP4.31□□□□□ -1.72
CDC48YDL126C CYC7P00045 113 aa4.31□□□□□ -1.72
CDC48YDL126C FEN2P25621 512 aaKnown RBP4.31□□□□□ -1.72
CDC48YDL126C FMP23P38231 175 aa4.31□□□□□ -1.72
CDC48YDL126C SDH8P38345 138 aa4.31□□□□□ -1.72
CDC48YDL126C FRT2P39734 528 aa4.31□□□□□ -1.72
CDC48YDL126C SLM1P40485 686 aa4.31□□□□□ -1.72
CDC48YDL126C HHO1P53551 258 aa4.31□□□□□ -1.72
CDC48YDL126C AQR1P53943 586 aa4.31□□□□□ -1.72
CDC48YDL126C PET117Q02771 107 aa4.31□□□□□ -1.72
CDC48YDL126C SHR3Q02774 210 aa4.31□□□□□ -1.72
CDC48YDL126C VPS74Q06385 345 aa4.31□□□□□ -1.72
CDC48YDL126C CDD1Q06549 142 aa4.31□□□□□ -1.72
CDC48YDL126C AIM39Q08223 395 aa4.31□□□□□ -1.72
CDC48YDL126C YDR018CQ12185 396 aa4.31□□□□□ -1.72
CDC48YDL126C PKH2Q12236 1081 aaKnown RBP4.31□□□□□ -1.72
CDC48YDL126C ATG31Q12421 196 aa4.31□□□□□ -1.72
CDC48YDL126C RAD10P06838 210 aa4.3□□□□□ -1.72
CDC48YDL126C CHS1P08004 1131 aa4.3□□□□□ -1.72
CDC48YDL126C ERG20P08524 352 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C FUS3P16892 353 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C RPI1P23250 407 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C ILV6P25605 309 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C PMT2P31382 759 aa4.3□□□□□ -1.72
CDC48YDL126C GDH2P33327 1092 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C DRE2P36152 348 aa4.3□□□□□ -1.72
CDC48YDL126C YPK3P38070 525 aa4.3□□□□□ -1.72
CDC48YDL126C BMT2P38278 337 aa4.3□□□□□ -1.72
CDC48YDL126C UME6P39001 836 aa4.3□□□□□ -1.72
CDC48YDL126C SMX2P40204 77 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C AZR1P50080 613 aa4.3□□□□□ -1.72
CDC48YDL126C NAS6P50086 228 aa4.3□□□□□ -1.72
CDC48YDL126C HER2Q03557 464 aa4.3□□□□□ -1.72
CDC48YDL126C PRM6Q04705 352 aa4.3□□□□□ -1.72
CDC48YDL126C THI7Q05998 598 aa4.3□□□□□ -1.72
CDC48YDL126C SNA4Q07549 140 aa4.3□□□□□ -1.72
CDC48YDL126C PUS9Q12069 462 aa4.3□□□□□ -1.72
CDC48YDL126C HOS1Q12214 470 aa4.3□□□□□ -1.72
CDC48YDL126C PFK27Q12471 397 aaPredicted RBP4.3□□□□□ -1.72
CDC48YDL126C YJR112W-AQ3E743 109 aa4.3□□□□□ -1.72
CDC48YDL126C MSF1P08425 469 aa4.3□□□□□ -1.72
CDC48YDL126C IDH2P28241 369 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C AUR1P36107 401 aaPredicted RBP4.3□□□□□ -1.72
CDC48YDL126C ECM31P38122 312 aa4.3□□□□□ -1.72
CDC48YDL126C EXO1P39875 702 aa4.3□□□□□ -1.72
CDC48YDL126C PCL6P40038 420 aa4.3□□□□□ -1.72
CDC48YDL126C EMC2P47133 292 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C RIB4P50861 169 aaPredicted RBP4.3□□□□□ -1.72
CDC48YDL126C TWF1P53250 332 aa4.3□□□□□ -1.72
CDC48YDL126C SLI1P53304 468 aa4.3□□□□□ -1.72
CDC48YDL126C GLO2Q05584 274 aa4.3□□□□□ -1.72
CDC48YDL126C YLR173WQ06247 608 aa4.3□□□□□ -1.72
CDC48YDL126C SDO1Q07953 250 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C SWM1Q12379 170 aa4.3□□□□□ -1.72
CDC48YDL126C DCN1Q12395 269 aa4.3□□□□□ -1.72
CDC48YDL126C RRP12Q12754 1228 aaKnown RBP4.3□□□□□ -1.72
CDC48YDL126C DFR1P07807 211 aaKnown RBP RIP-Chip data4.29□□□□□ -1.72not detected
CDC48YDL126C GPA2P10823 449 aa4.29□□□□□ -1.72
CDC48YDL126C SCH9P11792 824 aaKnown RBP4.29□□□□□ -1.72
CDC48YDL126C GIT1P25346 518 aa4.29□□□□□ -1.72
CDC48YDL126C ELO2P25358 347 aa4.29□□□□□ -1.72
CDC48YDL126C MGR1P25573 417 aa4.29□□□□□ -1.72
CDC48YDL126C ADE1P27616 306 aa4.29□□□□□ -1.72
CDC48YDL126C IMP3P32899 183 aaPredicted RBP4.29□□□□□ -1.72
CDC48YDL126C KAE1P36132 386 aa4.29□□□□□ -1.72
CDC48YDL126C AGP2P38090 596 aa4.29□□□□□ -1.72
CDC48YDL126C AFG3P39925 761 aa4.29□□□□□ -1.72
CDC48YDL126C YER184CP39961 794 aa4.29□□□□□ -1.72
CDC48YDL126C PET130P47065 347 aa4.29□□□□□ -1.72
CDC48YDL126C YJR056CP47115 236 aa4.29□□□□□ -1.72
CDC48YDL126C DBP6P53734 629 aaKnown RBP4.29□□□□□ -1.72
CDC48YDL126C SKI8Q02793 397 aaPredicted RBP4.29□□□□□ -1.72
CDC48YDL126C STD1Q02794 444 aa4.29□□□□□ -1.72
CDC48YDL126C GRS2Q06817 618 aa4.29□□□□□ -1.72
CDC48YDL126C IZH3Q07959 543 aa4.29□□□□□ -1.72
CDC48YDL126C SKI7Q08491 747 aaPredicted RBP4.29□□□□□ -1.72
CDC48YDL126C SNX3Q08826 162 aaKnown RBP4.29□□□□□ -1.72
CDC48YDL126C COX3P00420 269 aa4.29□□□□□ -1.72
CDC48YDL126C MF(ALPHA)1P01149 165 aa4.29□□□□□ -1.72
CDC48YDL126C CBF1P17106 351 aa4.29□□□□□ -1.72
CDC48YDL126C SLY1P22213 666 aa4.29□□□□□ -1.72
CDC48YDL126C SGV1P23293 657 aaKnown RBP4.29□□□□□ -1.72
CDC48YDL126C YSP3P25036 478 aa4.29□□□□□ -1.72
CDC48YDL126C FUB1P25659 250 aa4.29□□□□□ -1.72
CDC48YDL126C YPT10P38146 199 aa4.29□□□□□ -1.72
CDC48YDL126C PLB1P39105 664 aa4.29□□□□□ -1.72
CDC48YDL126C VMA7P39111 118 aa4.29□□□□□ -1.72
CDC48YDL126C SOK1P40317 901 aa4.29□□□□□ -1.72
CDC48YDL126C YIL054WP40524 105 aa4.29□□□□□ -1.72
CDC48YDL126C LSB3P43603 459 aaKnown RBP4.29□□□□□ -1.72
CDC48YDL126C TAF6P53040 516 aa4.29□□□□□ -1.72
CDC48YDL126C OKP1P53298 406 aa4.29□□□□□ -1.72
CDC48YDL126C YDR249CQ03787 373 aa4.29□□□□□ -1.72
CDC48YDL126C YMR027WQ04371 470 aa4.29□□□□□ -1.72
CDC48YDL126C GIM5Q04493 163 aa4.29□□□□□ -1.72
CDC48YDL126C MSL5Q12186 476 aaKnown RBP RIP-Chip data4.29□□□□□ -1.72not detected
CDC48YDL126C RRD2Q12461 358 aa4.29□□□□□ -1.72
CDC48YDL126C YOS9Q99220 542 aa4.29□□□□□ -1.72
CDC48YDL126C RPL35AP0CX84 120 aaKnown RBP4.28□□□□□ -1.72
CDC48YDL126C RPL35BP0CX85 120 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms