RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 RNF139Q8WU17 664 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 P3H4Q92791 437 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 VPS33AQ96AX1 596 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 QKIQ96PU8 341 aaKnown RBP eCLIP2.98□□□□□ -1.931e-6■■■■□ 23.5
SCN1A-219ENST00000641575 VPS11Q9H270 941 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PANK3Q9H999 370 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 C6orf203Q9P0P8 240 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF644Q9H582 1327 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DDX3XO00571 662 aaKnown RBP eCLIP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RALBP11234 206 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ATP6V1C1P21283 382 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 GJC1P36383 396 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 STX1BP61266 288 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DAB2P98082 770 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 IL1RL1Q01638 556 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 STK4Q13043 487 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DALRD3Q5D0E6 543 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM67Q5HYA8 995 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CAPRIN2Q6IMN6 1127 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 APPBP2Q92624 585 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NECTIN2Q92692 538 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 MPP4Q96JB8 637 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ZKSCAN3Q9BRR0 538 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 FRMD8Q9BZ67 464 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 LZTFL1Q9NQ48 299 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 JAG2Q9Y219 1238 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PCDHB3Q9Y5E6 796 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ERBB3P21860 1342 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ERBB4Q15303 1308 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PSMC3P17980 439 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 KRT2P35908 639 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SYKP43405 635 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 AP1S1P61966 158 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ACSM2AQ08AH3 577 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 LRMPQ12912 555 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RRS1Q15050 365 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 APOBEC3FQ8IUX4 373 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM145Q8NBT3 493 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 DENND1AQ8TEH3 1009 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ZKSCAN4Q969J2 545 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TRIM47Q96LD4 638 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 NLNQ9BYT8 704 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 HOXC10Q9NYD6 342 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GUCA1BQ9UMX6 200 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RWDD3Q9Y3V2 267 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 FANCAO15360 1455 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MAP4P27816 1152 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SSRP1Q08945 709 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 STX3Q13277 289 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 LAMB3Q13751 1172 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 IL31Q6EBC2 164 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 BTNL9Q6UXG8 535 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 UBE2R2Q712K3 238 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RILPQ96NA2 401 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 POLR3CQ9BUI4 534 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 COG4Q9H9E3 785 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CRTAC1Q9NQ79 661 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CNGB3Q9NQW8 809 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PARP2Q9UGN5 583 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 MRPS17Q9Y2R5 130 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CARMIL1Q5VZK9 1371 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GRM8O00222 908 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PTGS1P23219 599 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RWDD2BP57060 319 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 RAB14P61106 215 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 DHX9Q08211 1270 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 BRD3Q15059 726 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PPP2R5EQ16537 467 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ERFEQ4G0M1 354 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 VWA3BQ502W6 1294 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ZMYM1Q5SVZ6 1142 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SPATA18Q8TC71 538 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 FAM210AQ96ND0 272 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 AMNQ9BXJ7 453 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 DNAJC28Q9NX36 388 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SENP1Q9P0U3 644 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 TNFSF13BQ9Y275 285 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CASP8AP2Q9UKL3 1982 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SOWAHDA6NJG2 315 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 IFIT3O14879 490 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ITGA6P23229 1130 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SCNN1BP51168 640 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 KIAA1755Q5JYT7 1200 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 JADE1Q6IE81 842 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 NEK8Q86SG6 692 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ADCK1Q86TW2 530 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CAND1Q86VP6 1230 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 C12orf50Q8NA57 414 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 NEDD1Q8NHV4 660 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 JARID2Q92833 1246 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CASP10Q92851 521 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 KIF12Q96FN5 646 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ACAP3Q96P50 834 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 ZFATQ9P243 1243 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 SUPT6HQ7KZ85 1726 aaKnown RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PARD3Q8TEW0 1356 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 PTGES3LE9PB15 166 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 CALUO43852 315 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GNSP15586 552 aa2.97□□□□□ -1.93
SCN1A-219ENST00000641575 GRK2P25098 689 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms