RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SNX12Q9UMY4 172 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 SHROOM2Q13796 1616 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 GUCY1B2O75343 617 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ESRRAP11474 423 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 IFNA8P32881 189 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 SERPINB6P35237 376 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ARL1P40616 181 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 PLCD1P51178 756 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 AP2B1P63010 937 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 AMPD2Q01433 879 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 PRKG1Q13976 671 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TMC5Q6UXY8 1006 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 EXOC3L1Q86VI1 746 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 DDX50Q9BQ39 737 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 STK33Q9BYT3 514 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TRIM55Q9BYV6 548 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 IFIH1Q9BYX4 1025 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 DHX36Q9H2U1 1008 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 PAG1Q9NWQ8 432 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 RABGEF1Q9UJ41 708 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 KCNH3Q9ULD8 1083 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 RPL26L1Q9UNX3 145 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 PCDHA5Q9Y5H7 936 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 E9PCH4 1651 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 FBP2O00757 339 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 SPAG7O75391 227 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 KRT6AP02538 564 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 KRT6BP04259 564 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 RTP1P59025 263 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ESRRGP62508 458 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 CDK17Q00537 523 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 GRIN1Q05586 938 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ASPHQ12797 758 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 OR52E8Q6IFG1 317 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 SPERTQ8NA61 448 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 NUDT16Q96DE0 195 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TPK1Q9H3S4 243 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 OLFML3Q9NRN5 406 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 GIN1Q9NXP7 522 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 CABP1Q9NZU7 370 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 DIS3Q9Y2L1 958 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 MAP3K19Q56UN5 1328 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 SNX2O60749 519 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ADAMTS2O95450 1211 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 CHEK2O96017 543 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ENO2P09104 434 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TPBGLP0DKB5 382 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TNFRSF8P28908 595 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 SKIV2L2P42285 1042 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 RNASE9P60153 205 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 LPIN1Q14693 890 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 PARP6Q2NL67 630 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TDRD12Q587J7 1177 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 AGAP9Q5VTM2 703 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 IQCKQ8N0W5 287 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 MREGQ8N565 214 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TRIML2Q8N7C3 387 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TOR1AIP2Q8NFQ8 470 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 MDM1Q8TC05 714 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 XAB2Q9HCS7 855 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 AGAP1Q9UPQ3 857 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 FAM32AQ9Y421 112 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 E9PMD0 336 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 CXCR5P32302 372 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 S100A5P33763 92 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 IARSP41252 1262 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 RAP1GDS1P52306 607 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ARFIP2P53365 341 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 NUP107P57740 925 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TFAP4Q01664 338 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 KRT81Q14533 505 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TRIM16LQ309B1 348 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ADCK5Q3MIX3 580 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 PPP2R2DQ66LE6 453 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 CHCHD4Q8N4Q1 142 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 GALNT6Q8NCL4 622 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 OR2W6PQ8NHA6 318 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 DDI1Q8WTU0 396 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 OMA1Q96E52 524 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 THAP11Q96EK4 314 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ZNF333Q96JL9 665 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 CFAP57Q96MR6 1250 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 CYTH2Q99418 400 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 C12orf4Q9NQ89 552 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 SAMSN1Q9NSI8 373 aaKnown RBP6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TMOD2Q9NZR1 351 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 DOLKQ9UPQ8 538 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 GIT1Q9Y2X7 761 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 COQ6Q9Y2Z9 468 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 TELO2Q9Y4R8 837 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 ANGPTL3Q9Y5C1 460 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 MAGI2Q86UL8 1455 aa6.16□□□□□ -1.42
SCN1A-216ENST00000637968 NSD3Q9BZ95 1437 aa6.15□□□□□ -1.42
SCN1A-216ENST00000637968 RAPGEF6Q8TEU7 1601 aa6.15□□□□□ -1.42
SCN1A-216ENST00000637968 PABPN1LA6NDY0 278 aaKnown RBP6.15□□□□□ -1.42
SCN1A-216ENST00000637968 GOLGA8JA6NMD2 632 aa6.15□□□□□ -1.42
SCN1A-216ENST00000637968 GYG2O15488 501 aa6.15□□□□□ -1.42
SCN1A-216ENST00000637968 CLPTM1O96005 669 aa6.15□□□□□ -1.42
SCN1A-216ENST00000637968 RARAP10276 462 aa6.15□□□□□ -1.42
SCN1A-216ENST00000637968 CPA3P15088 417 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms