RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KLRF2D3W0D1 207 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 CLASP2O75122 1294 aaKnown RBP16.78■□□□□ 0.28
CLN3-249ENST00000636685 EOMESO95936 686 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 FGFR1P11362 822 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 INSRRP14616 1297 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 PDE4AP27815 886 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 PBX3P40426 434 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 MCMDC2Q4G0Z9 681 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 CCDC178Q5BJE1 867 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 RUBCNQ92622 972 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 GLG1Q92896 1179 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 ZSCAN10Q96SZ4 725 aaPredicted RBP16.78■□□□□ 0.28
CLN3-249ENST00000636685 ADAM2Q99965 735 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 CYP26B1Q9NR63 512 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 USTQ9Y2C2 406 aa16.78■□□□□ 0.28
CLN3-249ENST00000636685 LAMA4Q16363 1823 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 USP24Q9UPU5 2620 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 MX1P20591 662 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 TDGQ13569 410 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 ST3GAL2Q16842 350 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 SLC35G1Q2M3R5 365 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 KIAA1841Q6NSI8 718 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 TRAPPC12Q8WVT3 735 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 SEPT1Q8WYJ6 367 aa16.77■□□□□ 0.28
CLN3-249ENST00000636685 EVPLQ92817 2033 aa16.77■□□□□ 0.27
CLN3-249ENST00000636685 DENND3A2RUS2 1198 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 C2orf71A6NGG8 1288 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 RRN3P2A6NIE6 340 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 B4E1Z4 1266 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 C9IYK1 514 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 STK25O00506 426 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 ATP9AO75110 1047 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 RPLP2P05387 115 aaKnown RBP16.76■□□□□ 0.27
CLN3-249ENST00000636685 HNRNPUQ00839 825 aaKnown RBP eCLIP16.76■□□□□ 0.27
CLN3-249ENST00000636685 ATAT1Q5SQI0 421 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 KCNT2Q6UVM3 1135 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 LRRC55Q6ZSA7 311 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 MRPL43Q8N983 215 aaKnown RBP16.76■□□□□ 0.27
CLN3-249ENST00000636685 PIGSQ96S52 555 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 SMARCAD1Q9H4L7 1026 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 RGS18Q9NS28 235 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 DUSP12Q9UNI6 340 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 NOC2LQ9Y3T9 749 aaKnown RBP16.76■□□□□ 0.27
CLN3-249ENST00000636685 PCDHA2Q9Y5H9 948 aa16.76■□□□□ 0.27
CLN3-249ENST00000636685 KDM3AQ9Y4C1 1321 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 C2orf16Q68DN1 1984 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 KCNA2P16389 499 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 CA8P35219 290 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 KRT76Q01546 638 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 SMC1AQ14683 1233 aaKnown RBP16.75■□□□□ 0.27
CLN3-249ENST00000636685 SLC24A5Q71RS6 500 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 GIMAP8Q8ND71 665 aaPredicted RBP16.75■□□□□ 0.27
CLN3-249ENST00000636685 EVI5LQ96CN4 794 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 ATP6V0A4Q9HBG4 840 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 C1orf112Q9NSG2 853 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 MAD2L2Q9UI95 211 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 GINS2Q9Y248 185 aa16.75■□□□□ 0.27
CLN3-249ENST00000636685 NARSO43776 548 aaKnown RBP16.74■□□□□ 0.27
CLN3-249ENST00000636685 RPS6KA5O75582 802 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 KRT17Q04695 432 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 NMIQ13287 307 aaPredicted RBP16.74■□□□□ 0.27
CLN3-249ENST00000636685 C20orf194Q5TEA3 1177 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 NLRX1Q86UT6 975 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 ZNF558Q96NG5 402 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 PCYT2Q99447 389 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 KCNK12Q9HB15 430 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 CDHR5Q9HBB8 845 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 RNF216Q9NWF9 866 aaPredicted RBP16.74■□□□□ 0.27
CLN3-249ENST00000636685 PKD2L1Q9P0L9 805 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 ZSWIM5Q9P217 1185 aa16.74■□□□□ 0.27
CLN3-249ENST00000636685 ATRXP46100 2492 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 KRBA1A5PL33 1030 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 PALM3A6NDB9 673 aaPredicted RBP16.73■□□□□ 0.27
CLN3-249ENST00000636685 ZNF213O14771 459 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 SP9P0CG40 484 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 EPCAMP16422 314 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 PCNX4Q63HM2 1172 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 TMC5Q6UXY8 1006 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 TMEM40Q8WWA1 233 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 ACSF2Q96CM8 615 aaPredicted RBP16.73■□□□□ 0.27
CLN3-249ENST00000636685 CASD1Q96PB1 797 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 RNF19AQ9NV58 838 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 TMEM161AQ9NX61 479 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 SPG21Q9NZD8 308 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 ST3GAL5Q9UNP4 418 aa16.73■□□□□ 0.27
CLN3-249ENST00000636685 CFHP08603 1231 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 PPM1AP35813 382 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 ATXN1P54253 815 aaKnown RBP16.72■□□□□ 0.27
CLN3-249ENST00000636685 FAM189BP81408 668 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 PLCB4Q15147 1175 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 SPECC1Q5M775 1068 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 XRRA1Q6P2D8 792 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 ZC3H14Q6PJT7 736 aaKnown RBP16.72■□□□□ 0.27
CLN3-249ENST00000636685 SUMF1Q8NBK3 374 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 TMEM117Q9H0C3 514 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 DZANK1Q9NVP4 752 aa16.72■□□□□ 0.27
CLN3-249ENST00000636685 SALL3Q9BXA9 1300 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 SMIM35A0A1B0GVV1 85 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 CXCL14O95715 111 aa16.71■□□□□ 0.27
CLN3-249ENST00000636685 DCNP07585 359 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms