RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TREHO43280 583 aa20.27■□□□□ 0.84
CLN3-239ENST00000628023 HOXC8P31273 242 aa20.27■□□□□ 0.84
CLN3-239ENST00000628023 ATP2C1P98194 919 aaPredicted RBP20.27■□□□□ 0.84
CLN3-239ENST00000628023 PTK7Q13308 1070 aa20.27■□□□□ 0.84
CLN3-239ENST00000628023 HIC1Q14526 733 aa20.27■□□□□ 0.84
CLN3-239ENST00000628023 SF3A1Q15459 793 aaKnown RBP20.27■□□□□ 0.84
CLN3-239ENST00000628023 NEK9Q8TD19 979 aa20.27■□□□□ 0.84
CLN3-239ENST00000628023 SYMPKQ92797 1274 aaKnown RBP20.27■□□□□ 0.84
CLN3-239ENST00000628023 DYDC2Q96IM9 177 aa20.27■□□□□ 0.84
CLN3-239ENST00000628023 EIF2AK1Q9BQI3 630 aaKnown RBP20.27■□□□□ 0.84
CLN3-239ENST00000628023 PRDM12Q9H4Q4 367 aa20.27■□□□□ 0.84
CLN3-239ENST00000628023 COL1A2P08123 1366 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 ZNF862O60290 1169 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 F13A1P00488 732 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 ATP2A2P16615 1042 aaKnown RBP20.26■□□□□ 0.83
CLN3-239ENST00000628023 ATP4AP20648 1035 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 PRPHP41219 470 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 FXR2P51116 673 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-239ENST00000628023 PKP1Q13835 747 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 CTTNQ14247 550 aaKnown RBP20.26■□□□□ 0.83
CLN3-239ENST00000628023 ZNF484Q5JVG2 852 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 DEFB128Q7Z7B8 93 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 TPH2Q8IWU9 490 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 CAGE1Q8TC20 777 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 TRAPPC12Q8WVT3 735 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 NKX2-4Q9H2Z4 354 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 RGL1Q9NZL6 768 aa20.26■□□□□ 0.83
CLN3-239ENST00000628023 DDX11L8A8MPP1 907 aa20.25■□□□□ 0.83
CLN3-239ENST00000628023 CEBPZQ03701 1054 aaKnown RBP20.25■□□□□ 0.83
CLN3-239ENST00000628023 XKR3Q5GH77 459 aa20.25■□□□□ 0.83
CLN3-239ENST00000628023 HAUS3Q68CZ6 603 aa20.25■□□□□ 0.83
CLN3-239ENST00000628023 SERINC5Q86VE9 423 aa20.25■□□□□ 0.83
CLN3-239ENST00000628023 ZNF396Q96N95 335 aaPredicted RBP20.25■□□□□ 0.83
CLN3-239ENST00000628023 ZSWIM4Q9H7M6 989 aa20.25■□□□□ 0.83
CLN3-239ENST00000628023 LRWD1Q9UFC0 647 aa20.25■□□□□ 0.83
CLN3-239ENST00000628023 PCDHA11Q9Y5I1 949 aa20.25■□□□□ 0.83
CLN3-239ENST00000628023 TRIP12Q14669 1992 aaPredicted RBP20.25■□□□□ 0.83
CLN3-239ENST00000628023 VWA3AA6NCI4 1184 aa20.24■□□□□ 0.83
CLN3-239ENST00000628023 THPOP40225 353 aa20.24■□□□□ 0.83
CLN3-239ENST00000628023 FOXD4L6Q3SYB3 417 aaPredicted RBP20.24■□□□□ 0.83
CLN3-239ENST00000628023 MTERF2Q49AM1 385 aa20.24■□□□□ 0.83
CLN3-239ENST00000628023 TAF2Q6P1X5 1199 aa20.24■□□□□ 0.83
CLN3-239ENST00000628023 FOXD4L3Q6VB84 417 aaPredicted RBP20.24■□□□□ 0.83
CLN3-239ENST00000628023 CCDC43Q96MW1 224 aaKnown RBP20.24■□□□□ 0.83
CLN3-239ENST00000628023 CTAGE1Q96RT6 745 aa20.24■□□□□ 0.83
CLN3-239ENST00000628023 FTOQ9C0B1 505 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLN3-239ENST00000628023 CLIC4Q9Y696 253 aa20.24■□□□□ 0.83
CLN3-239ENST00000628023 WDR81Q562E7 1941 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 MBLAC1A4D2B0 266 aaPredicted RBP20.23■□□□□ 0.83
CLN3-239ENST00000628023 IQCF3P0C7M6 154 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 IGFBP4P22692 258 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 ADAM17P78536 824 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 PPP2R2DQ66LE6 453 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 ARL6IP4Q66PJ3 421 aaKnown RBP20.23■□□□□ 0.83
CLN3-239ENST00000628023 MTHFD1LQ6UB35 978 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 RUFY4Q6ZNE9 571 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 RSPH3Q86UC2 560 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 PRUNE2Q8WUY3 3088 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 PPM1EQ8WY54 764 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 DHX38Q92620 1227 aaKnown RBP20.23■□□□□ 0.83
CLN3-239ENST00000628023 ZBTB10Q96DT7 871 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 FAM49AQ9H0Q0 323 aaPredicted RBP20.23■□□□□ 0.83
CLN3-239ENST00000628023 STK24Q9Y6E0 443 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 EYSQ5T1H1 3165 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 CDH23Q9H251 3354 aa20.23■□□□□ 0.83
CLN3-239ENST00000628023 TMEM150BA6NC51 233 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 CKBP12277 381 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 KLRC1P26715 233 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 YWHABP31946 246 aaKnown RBP20.22■□□□□ 0.83
CLN3-239ENST00000628023 CCT6AP40227 531 aaKnown RBP20.22■□□□□ 0.83
CLN3-239ENST00000628023 RABGGTBP53611 331 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 TBC1D8BQ0IIM8 1120 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 PDIA5Q14554 519 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 MARCH8Q5T0T0 291 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 PLA2G4FQ68DD2 849 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 OTUD6AQ7L8S5 288 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 C4orf19Q8IY42 314 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 METTL13Q8N6R0 699 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 SNX29Q8TEQ0 813 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 WNT8BQ93098 351 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 USP28Q96RU2 1077 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 HSD17B14Q9BPX1 270 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 TUFT1Q9NNX1 390 aa20.22■□□□□ 0.83
CLN3-239ENST00000628023 WRAP73Q9P2S5 460 aaPredicted RBP20.22■□□□□ 0.83
CLN3-239ENST00000628023 YBX2Q9Y2T7 364 aaKnown RBP20.22■□□□□ 0.83
CLN3-239ENST00000628023 SLITRK3O94933 977 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 RPLP2P05387 115 aaKnown RBP20.21■□□□□ 0.83
CLN3-239ENST00000628023 CTSHP09668 335 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 SELPP16109 830 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 IL17AQ16552 155 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 KRT79Q5XKE5 535 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 LRRC8DQ7L1W4 858 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 IGSF22Q8N9C0 903 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 DNAJB3Q8WWF6 145 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 SLC9A7Q96T83 725 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 SH2D3AQ9BRG2 576 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 POLR3CQ9BUI4 534 aaPredicted RBP20.21■□□□□ 0.83
CLN3-239ENST00000628023 PCDHA2Q9Y5H9 948 aa20.21■□□□□ 0.83
CLN3-239ENST00000628023 ZBTB42B2RXF5 422 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 MAGEB2O15479 319 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms