RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SEPT9Q9UHD8 586 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 NOL7Q9UMY1 257 aaKnown RBP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 MYO7AQ13402 2215 aa15.15■□□□□ 0.02
LINC00540-202ENST00000616974 SOX1O00570 391 aaPredicted RBP15.15■□□□□ 0.02
LINC00540-202ENST00000616974 CHRNA1P02708 482 aa15.15■□□□□ 0.02
LINC00540-202ENST00000616974 SFNP31947 248 aa15.15■□□□□ 0.02
LINC00540-202ENST00000616974 MKRN4PQ13434 485 aaPredicted RBP15.15■□□□□ 0.02
LINC00540-202ENST00000616974 SF3A1Q15459 793 aaKnown RBP15.15■□□□□ 0.02
LINC00540-202ENST00000616974 MTERF2Q49AM1 385 aa15.15■□□□□ 0.02
LINC00540-202ENST00000616974 TPH2Q8IWU9 490 aa15.15■□□□□ 0.02
LINC00540-202ENST00000616974 SLFN12Q8IYM2 578 aa15.15■□□□□ 0.02
LINC00540-202ENST00000616974 UBE2OQ9C0C9 1292 aaKnown RBP15.15■□□□□ 0.02
LINC00540-202ENST00000616974 POLD4Q9HCU8 107 aa15.15■□□□□ 0.02
LINC00540-202ENST00000616974 FPGSQ05932 587 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 PTK7Q13308 1070 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 RILPL1Q5EBL4 403 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 SPECC1Q5M775 1068 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 POTEGQ6S5H5 508 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 CATSPER3Q86XQ3 398 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 BAG4O95429 457 aaKnown RBP15.14■□□□□ 0.01
LINC00540-202ENST00000616974 VTNP04004 478 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 PDCP20941 246 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 MARCKSP29966 332 aaPredicted RBP15.14■□□□□ 0.01
LINC00540-202ENST00000616974 ATP2C1P98194 919 aaPredicted RBP15.14■□□□□ 0.01
LINC00540-202ENST00000616974 PTPAQ15257 358 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 TARBP2Q15633 366 aaKnown RBP15.14■□□□□ 0.01
LINC00540-202ENST00000616974 USP49Q70CQ1 688 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 ZNF365Q70YC5 407 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 LRRC8DQ7L1W4 858 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 OTOP2Q7RTS6 562 aa15.14■□□□□ 0.01
LINC00540-202ENST00000616974 NAP1L4Q99733 375 aaKnown RBP15.14■□□□□ 0.01
LINC00540-202ENST00000616974 LBHD1Q9BQE6 289 aaPredicted RBP15.14■□□□□ 0.01
LINC00540-202ENST00000616974 MMTAG2Q9BU76 263 aaKnown RBP15.14■□□□□ 0.01
LINC00540-202ENST00000616974 TFIP11Q9UBB9 837 aaKnown RBP15.14■□□□□ 0.01
LINC00540-202ENST00000616974 VWA3AA6NCI4 1184 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 HBP1O60381 514 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 QARSP47897 775 aaKnown RBP15.13■□□□□ 0.01
LINC00540-202ENST00000616974 EPHA7Q15375 998 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 TMEM240Q5SV17 173 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 KCNK18Q7Z418 384 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 KIAA0319LQ8IZA0 1049 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 TMEM40Q8WWA1 233 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 BBXQ8WY36 941 aaPredicted RBP15.13■□□□□ 0.01
LINC00540-202ENST00000616974 PLIN2Q99541 437 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 MYH11P35749 1972 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 DDX11L8A8MPP1 907 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 GRXCR1A8MXD5 290 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 PITPNM1O00562 1244 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 CSDE1O75534 798 aaKnown RBP15.13■□□□□ 0.01
LINC00540-202ENST00000616974 PSMC5P62195 406 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 METTL13Q8N6R0 699 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 IGSF22Q8N9C0 903 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 CLIC6Q96NY7 704 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 GINS2Q9Y248 185 aa15.13■□□□□ 0.01
LINC00540-202ENST00000616974 P4HBP07237 508 aaKnown RBP15.12■□□□□ 0.01
LINC00540-202ENST00000616974 SELPP16109 830 aa15.12■□□□□ 0.01
LINC00540-202ENST00000616974 BRAPQ7Z569 592 aa15.12■□□□□ 0.01
LINC00540-202ENST00000616974 KSR1Q8IVT5 923 aa15.12■□□□□ 0.01
LINC00540-202ENST00000616974 SUGCTQ9HAC7 445 aa15.12■□□□□ 0.01
LINC00540-202ENST00000616974 ZSCAN22P10073 491 aaPredicted RBP15.11■□□□□ 0.01
LINC00540-202ENST00000616974 YWHABP31946 246 aaKnown RBP15.11■□□□□ 0.01
LINC00540-202ENST00000616974 SLC26A2P50443 739 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 MGAT3Q09327 533 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 TMEM266Q2M3C6 531 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 LINC01465Q8N7H1 131 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 RDM1Q8NG50 284 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 LRCH3Q96II8 777 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 AGO3Q9H9G7 860 aaKnown RBP15.11■□□□□ 0.01
LINC00540-202ENST00000616974 F13A1P00488 732 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 FXR2P51116 673 aaKnown RBP eCLIP15.11■□□□□ 0.01
LINC00540-202ENST00000616974 RBL2Q08999 1139 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 ZRSR1Q15695 479 aaKnown RBP15.11■□□□□ 0.01
LINC00540-202ENST00000616974 KIZQ2M2Z5 673 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 XKR3Q5GH77 459 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 CAGE1Q8TC20 777 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 CYP26B1Q9NR63 512 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 LRWD1Q9UFC0 647 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 PCDHA2Q9Y5H9 948 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 CDY2AQ9Y6F7 541 aa15.11■□□□□ 0.01
LINC00540-202ENST00000616974 RSPH10B2B2RC85 870 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 RSPH10BP0C881 870 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 GHRP10912 638 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 EFCAB12Q6NXP0 572 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 TMEM199Q8N511 208 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 NIFKQ9BYG3 293 aaKnown RBP15.1■□□□□ 0.01
LINC00540-202ENST00000616974 SEZ6LQ9BYH1 1024 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 IL23AQ9NPF7 189 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 XPNPEP1Q9NQW7 623 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 TTC3P53804 2025 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 BFSP2Q13515 415 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 ZNF484Q5JVG2 852 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 MAEAQ7L5Y9 396 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 C4orf19Q8IY42 314 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 TDHQ8IZJ6 230 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 DBF4BQ8NFT6 615 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 TMEM143Q96AN5 459 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 CEP170P1Q96L14 293 aa15.1■□□□□ 0.01
LINC00540-202ENST00000616974 RRN3P2A6NIE6 340 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 E9PMD0 336 aa15.09■□□□□ 0.01
LINC00540-202ENST00000616974 GNAT1P11488 350 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms