RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 PIK3AP1Q6ZUJ8 805 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 C4orf32Q8N8J7 132 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 ZBTB10Q96DT7 871 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 PCYT2Q99447 389 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 ZBED2Q9BTP6 218 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 FAM86C1Q9NVL1 165 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 LOXHD1Q8IVV2 1947 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 ABHD14A-ACY1A0A1B0GW23 586 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-214ENST00000600840 SPDYE3A6NKU9 549 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 H3BQV1 296 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 GJB5O95377 273 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 F13A1P00488 732 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 HSP90AA1P07900 732 aaKnown RBP9.9□□□□□ -0.82
TRIM28-214ENST00000600840 IRS1P35568 1242 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 TCF7P36402 384 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-214ENST00000600840 IKBKEQ14164 716 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 INF2Q27J81 1249 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 PLEKHG4Q58EX7 1191 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 FAM173BQ6P4H8 233 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 EP400NLQ6ZTU2 488 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 NIPA1Q7RTP0 329 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 NEK9Q8TD19 979 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 LMBR1Q8WVP7 490 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 TGS1Q96RS0 853 aaKnown RBP9.9□□□□□ -0.82
TRIM28-214ENST00000600840 SENP7Q9BQF6 1050 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 C17orf80Q9BSJ5 609 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 MUTYHQ9UIF7 546 aa9.9□□□□□ -0.82
TRIM28-214ENST00000600840 CIZ1Q9ULV3 898 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-214ENST00000600840 TECTAO75443 2155 aa9.9□□□□□ -0.83
TRIM28-214ENST00000600840 VPS37CA5D8V6 355 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-214ENST00000600840 DHX15O43143 795 aaKnown RBP9.89□□□□□ -0.83
TRIM28-214ENST00000600840 PARNO95453 639 aaKnown RBP9.89□□□□□ -0.83
TRIM28-214ENST00000600840 TDP2O95551 362 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 CHRNA1P02708 482 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 ARP10275 920 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 MARK3P27448 753 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 TRAPPC10P48553 1259 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 SAFBQ15424 915 aaKnown RBP eCLIP9.89□□□□□ -0.83
TRIM28-214ENST00000600840 Q4G0T1 1027 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 CEP55Q53EZ4 464 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 MARCH8Q5T0T0 291 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 B3GNT9Q6UX72 402 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 BRAPQ7Z569 592 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 NEK8Q86SG6 692 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 NLRX1Q86UT6 975 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 FERMT3Q86UX7 667 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 HAS1Q92839 578 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 GPRASP2Q96D09 838 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 MTMR9Q96QG7 549 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 MXRA8Q9BRK3 442 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 ZSCAN16Q9H4T2 348 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-214ENST00000600840 JADE2Q9NQC1 790 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.89□□□□□ -0.83
TRIM28-214ENST00000600840 NLRC5Q86WI3 1866 aa9.89□□□□□ -0.83
TRIM28-214ENST00000600840 PLXNA3P51805 1871 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 CCDC194A0A1B0GVG4 234 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 C19orf67A6NJJ6 358 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 GFRA3O60609 400 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 TCF15Q12870 199 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 MTMR1Q13613 665 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 NBR1Q14596 966 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 PTPAQ15257 358 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 FAM26DQ5JW98 314 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 MCTP1Q6DN14 999 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 MYOCDQ8IZQ8 938 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 FBXO22Q8NEZ5 403 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 SEPT1Q8WYJ6 367 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 CHAMP1Q96JM3 812 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 MFSD14AQ96MC6 490 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 RAD9AQ99638 391 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 BRMS1Q9HCU9 246 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 KCNMB3Q9NPA1 279 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 PCDHB6Q9Y5E3 794 aa9.88□□□□□ -0.83
TRIM28-214ENST00000600840 MSH4O15457 936 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 MAFGO15525 162 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 SLC37A4O43826 429 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 UPP2O95045 317 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 NUCB2P80303 420 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 HTRA4P83105 476 aaPredicted RBP9.87□□□□□ -0.83
TRIM28-214ENST00000600840 MGAT3Q09327 533 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 ITGB3BPQ13352 177 aaPredicted RBP9.87□□□□□ -0.83
TRIM28-214ENST00000600840 CLUL1Q15846 466 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 LETM2Q2VYF4 491 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 PUS10Q3MIT2 529 aaKnown RBP9.87□□□□□ -0.83
TRIM28-214ENST00000600840 RILPL1Q5EBL4 403 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 TCEAL5Q5H9L2 206 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 ADHFE1Q8IWW8 467 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 ETNPPLQ8TBG4 499 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 TRAPPC12Q8WVT3 735 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 DNAJB3Q8WWF6 145 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 MRPL38Q96DV4 380 aaKnown RBP9.87□□□□□ -0.83
TRIM28-214ENST00000600840 USP28Q96RU2 1077 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 TMEM60Q9H2L4 133 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 EHMT1Q9H9B1 1298 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 KCNH7Q9NS40 1196 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 CHMP5Q9NZZ3 219 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 MORC2Q9Y6X9 1032 aaPredicted RBP9.87□□□□□ -0.83
TRIM28-214ENST00000600840 COL4A6Q14031 1691 aa9.87□□□□□ -0.83
TRIM28-214ENST00000600840 EMSYQ7Z589 1322 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms