RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 SIGLEC14Q08ET2 396 aa7□□□□□ -1.29
VRK3-220ENST00000600259 FUT2Q10981 343 aa7□□□□□ -1.29
VRK3-220ENST00000600259 SART3Q15020 963 aaKnown RBP7□□□□□ -1.29
VRK3-220ENST00000600259 PKN1Q16512 942 aa7□□□□□ -1.29
VRK3-220ENST00000600259 ABHD15Q6UXT9 468 aa7□□□□□ -1.29
VRK3-220ENST00000600259 LRRC55Q6ZSA7 311 aa7□□□□□ -1.29
VRK3-220ENST00000600259 RALYLQ86SE5 291 aaKnown RBP7□□□□□ -1.29
VRK3-220ENST00000600259 CTCFLQ8NI51 663 aaPredicted RBP7□□□□□ -1.29
VRK3-220ENST00000600259 RASGRP4Q8TDF6 673 aa7□□□□□ -1.29
VRK3-220ENST00000600259 CRYGNQ8WXF5 182 aa7□□□□□ -1.29
VRK3-220ENST00000600259 JPH1Q9HDC5 661 aaPredicted RBP7□□□□□ -1.29
VRK3-220ENST00000600259 RGS18Q9NS28 235 aa7□□□□□ -1.29
VRK3-220ENST00000600259 RNF19AQ9NV58 838 aa7□□□□□ -1.29
VRK3-220ENST00000600259 TYW1Q9NV66 732 aaKnown RBP7□□□□□ -1.29
VRK3-220ENST00000600259 PKD2L1Q9P0L9 805 aa7□□□□□ -1.29
VRK3-220ENST00000600259 SLC9A2Q9UBY0 812 aa7□□□□□ -1.29
VRK3-220ENST00000600259 RBM8AQ9Y5S9 174 aaKnown RBP7□□□□□ -1.29
VRK3-220ENST00000600259 WDR87Q6ZQQ6 2873 aa7□□□□□ -1.29
VRK3-220ENST00000600259 ADAMTS3O15072 1205 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 PRC1O43663 620 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 HBP1O60381 514 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 GPR32O75388 356 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 FGF18O76093 207 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 PLCB3Q01970 1234 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 NFX1Q12986 1120 aaKnown RBP6.99□□□□□ -1.29
VRK3-220ENST00000600259 PAK2Q13177 524 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 CEP55Q53EZ4 464 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 ANKRD54Q6NXT1 300 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 TMTC3Q6ZXV5 915 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 SLC24A5Q71RS6 500 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 TMTC2Q8N394 836 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 CCDC82Q8N4S0 544 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 FANCBQ8NB91 859 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 COLGALT1Q8NBJ5 622 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 RUFY2Q8WXA3 655 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 PPP2R3CQ969Q6 453 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 TMEM87BQ96K49 555 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 RPGRIP1Q96KN7 1286 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 SNX27Q96L92 541 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 CDCA3Q99618 268 aaPredicted RBP6.99□□□□□ -1.29
VRK3-220ENST00000600259 ADAM2Q99965 735 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 AGO4Q9HCK5 861 aaKnown RBP6.99□□□□□ -1.29
VRK3-220ENST00000600259 ST3GAL5Q9UNP4 418 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 LZTS1Q9Y250 596 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 PCDHB7Q9Y5E2 793 aa6.99□□□□□ -1.29
VRK3-220ENST00000600259 KAT6AQ92794 2004 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 IGLV3-22A0A075B6J6 115 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 SPDYE3A6NKU9 549 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 TBKBP1A7MCY6 615 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 HIDE1A8MVS5 230 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 PROB1E7EW31 1015 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 EDIL3O43854 480 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 ST18O60284 1047 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 RPS6KA5O75582 802 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 PDGFBP01127 241 aaPredicted RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 MCM5P33992 734 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 CLK2P49760 499 aaKnown RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 SLC26A2P50443 739 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 CRYBB1P53674 252 aaPredicted RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 APOBRQ0VD83 1088 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 NECTIN1Q15223 517 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 PTPN21Q16825 1174 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 ZNF484Q5JVG2 852 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 WWC2Q6AWC2 1192 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 PDE12Q6L8Q7 609 aaKnown RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 NIPA1Q7RTP0 329 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 SGMS1Q86VZ5 419 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 FAM228AQ86W67 206 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 RAB11FIP4Q86YS3 637 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 CCDC60Q8IWA6 550 aaPredicted RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 TEX2Q8IWB9 1127 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 LINC01465Q8N7H1 131 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 MICAL1Q8TDZ2 1067 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 TNPO1Q92973 898 aaKnown RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 PGBD1Q96JS3 809 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 RIPOR3Q96MK2 946 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 CASD1Q96PB1 797 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 PRRX2Q99811 253 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 LSG1Q9H089 658 aaKnown RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 AZI2Q9H6S1 392 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 ELAC1Q9H777 363 aaKnown RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 RIC8AQ9NPQ8 531 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 TLR9Q9NR96 1032 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 C1orf112Q9NSG2 853 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 FAM217BQ9NTX9 383 aaPredicted RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 FAM86C1Q9NVL1 165 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 TMEM260Q9NX78 707 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 SEC63Q9UGP8 760 aaKnown RBP6.98□□□□□ -1.29
VRK3-220ENST00000600259 CDH22Q9UJ99 828 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 LRFN2Q9ULH4 789 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 TRPC6Q9Y210 931 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 SSUH2Q9Y2M2 353 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 PCDHB12Q9Y5F1 795 aa6.98□□□□□ -1.29
VRK3-220ENST00000600259 FAM86B1E9PN63 330 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 M0QZ92 97 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 SLC27A2O14975 620 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 GPR182O15218 404 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 C22orf31O95567 290 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 FOSP01100 380 aaPredicted RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 CYP3A4P08684 503 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms