RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 TTC38Q5R3I4 469 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 ARHGEF16Q5VV41 709 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 ATL3Q6DD88 541 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 C17orf99Q6UX52 265 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 NEK8Q86SG6 692 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 SAMD3Q8N6K7 520 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 SYTL5Q8TDW5 730 aaPredicted RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 TBCKQ8TEA7 893 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 TNFRSF25Q93038 417 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 CHAMP1Q96JM3 812 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 PNMA5Q96PV4 448 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 MPHOSPH6Q99547 160 aaKnown RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 PORCNQ9H237 461 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 EFCC1Q9HA90 598 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 A1CFQ9NQ94 594 aaKnown RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 CYP39A1Q9NYL5 469 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 ADD3Q9UEY8 706 aaKnown RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 CEP131Q9UPN4 1083 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 CNPY2Q9Y2B0 182 aa6.02□□□□□ -1.45
LIG3-210ENST00000588109 DNMT3AQ9Y6K1 912 aaPredicted RBP6.02□□□□□ -1.45
LIG3-210ENST00000588109 ADGRA2Q96PE1 1338 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 MYH15Q9Y2K3 1946 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 B4DLN1 442 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 C2CD2LO14523 706 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 MARCH6O60337 910 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 TRPA1O75762 1119 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 BAG4O95429 457 aaKnown RBP6.01□□□□□ -1.45
LIG3-210ENST00000588109 TBC1D8O95759 1140 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 PGK2P07205 417 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 ARAFP10398 606 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 MYCLP12524 364 aaPredicted RBP6.01□□□□□ -1.45
LIG3-210ENST00000588109 EIF2AK2P19525 551 aaKnown RBP6.01□□□□□ -1.45
LIG3-210ENST00000588109 AMPD1P23109 780 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 ADH6P28332 368 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 MCM7P33993 719 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 SREBF1P36956 1147 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 IDH3AP50213 366 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 ARSDP51689 593 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 ARHGAP4P98171 946 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 GHRHRQ02643 423 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 TYRO3Q06418 890 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 SPEM2Q0P670 501 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 ZNF174Q15697 407 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 ANO1Q5XXA6 986 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 LYPD4Q6UWN0 246 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 GPR142Q7Z601 462 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 PLEKHH3Q7Z736 793 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 GALNT6Q8NCL4 622 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 NSUN6Q8TEA1 469 aaKnown RBP6.01□□□□□ -1.45
LIG3-210ENST00000588109 ACDQ96AP0 544 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 SPATA32Q96LK8 384 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 TAAR1Q96RJ0 339 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 USP28Q96RU2 1077 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 RMDN3Q96TC7 470 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 NAP1L4Q99733 375 aaKnown RBP6.01□□□□□ -1.45
LIG3-210ENST00000588109 FTOQ9C0B1 505 aaKnown RBP eCLIP6.01□□□□□ -1.45
LIG3-210ENST00000588109 SCAND2PQ9GZW5 306 aaPredicted RBP6.01□□□□□ -1.45
LIG3-210ENST00000588109 MAF1Q9H063 256 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 RNF186Q9NXI6 227 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 SLC5A4Q9NY91 659 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 FAM13BQ9NYF5 915 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 COL20A1Q9P218 1284 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 SMCHD1A6NHR9 2005 aa6.01□□□□□ -1.45
LIG3-210ENST00000588109 THSD7BQ9C0I4 1608 aa6□□□□□ -1.45
LIG3-210ENST00000588109 PLXNB2O15031 1838 aa6□□□□□ -1.45
LIG3-210ENST00000588109 CARNS1A5YM72 827 aa6□□□□□ -1.45
LIG3-210ENST00000588109 GOLGA6L4A6NEF3 574 aa6□□□□□ -1.45
LIG3-210ENST00000588109 TNPO2O14787 897 aaKnown RBP6□□□□□ -1.45
LIG3-210ENST00000588109 STRNO43815 780 aa6□□□□□ -1.45
LIG3-210ENST00000588109 NEMFO60524 1076 aa6□□□□□ -1.45
LIG3-210ENST00000588109 TDP2O95551 362 aa6□□□□□ -1.45
LIG3-210ENST00000588109 BMP15O95972 392 aa6□□□□□ -1.45
LIG3-210ENST00000588109 GCFC2P16383 781 aaKnown RBP6□□□□□ -1.45
LIG3-210ENST00000588109 CDK11BP21127 795 aaKnown RBP6□□□□□ -1.45
LIG3-210ENST00000588109 ADORA2AP29274 412 aa6□□□□□ -1.45
LIG3-210ENST00000588109 CCND2P30279 289 aa6□□□□□ -1.45
LIG3-210ENST00000588109 ME1P48163 572 aa6□□□□□ -1.45
LIG3-210ENST00000588109 TOB1P50616 345 aaPredicted RBP6□□□□□ -1.45
LIG3-210ENST00000588109 USP11P51784 963 aa6□□□□□ -1.45
LIG3-210ENST00000588109 FCGRTP55899 365 aa6□□□□□ -1.45
LIG3-210ENST00000588109 PCBP4P57723 403 aaKnown RBP6□□□□□ -1.45
LIG3-210ENST00000588109 CNTN2Q02246 1040 aa6□□□□□ -1.45
LIG3-210ENST00000588109 MAP2K1Q02750 393 aaPredicted RBP6□□□□□ -1.45
LIG3-210ENST00000588109 ORC2Q13416 577 aaPredicted RBP6□□□□□ -1.45
LIG3-210ENST00000588109 KIF22Q14807 665 aa6□□□□□ -1.45
LIG3-210ENST00000588109 ZNF385CQ66K41 422 aaPredicted RBP6□□□□□ -1.45
LIG3-210ENST00000588109 CAPN12Q6ZSI9 719 aa6□□□□□ -1.45
LIG3-210ENST00000588109 DPP9Q86TI2 863 aa6□□□□□ -1.45
LIG3-210ENST00000588109 TREML1Q86YW5 311 aa6□□□□□ -1.45
LIG3-210ENST00000588109 ABRAQ8N0Z2 381 aa6□□□□□ -1.45
LIG3-210ENST00000588109 KCTD17Q8N5Z5 321 aa6□□□□□ -1.45
LIG3-210ENST00000588109 JMYQ8N9B5 988 aa6□□□□□ -1.45
LIG3-210ENST00000588109 RETREG2Q8NC44 543 aa6□□□□□ -1.45
LIG3-210ENST00000588109 DNERQ8NFT8 737 aa6□□□□□ -1.45
LIG3-210ENST00000588109 KCNG4Q8TDN1 519 aa6□□□□□ -1.45
LIG3-210ENST00000588109 WHAMMQ8TF30 809 aa6□□□□□ -1.45
LIG3-210ENST00000588109 SAP130Q9H0E3 1048 aa6□□□□□ -1.45
LIG3-210ENST00000588109 R3HDMLQ9H3Y0 253 aa6□□□□□ -1.45
LIG3-210ENST00000588109 AVENQ9NQS1 362 aaPredicted RBP6□□□□□ -1.45
LIG3-210ENST00000588109 PXMP2Q9NR77 195 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms