RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 CXXC5Q7LFL8 322 aaKnown RBP6.67□□□□□ -1.34
NUP88-208ENST00000574087 C11orf74Q86VG3 221 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 SIAH1Q8IUQ4 282 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 E2F7Q96AV8 911 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 MAML3Q96JK9 1138 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 APOBEC2Q9Y235 224 aaKnown RBP6.67□□□□□ -1.34
NUP88-208ENST00000574087 UBA6A0AVT1 1052 aaPredicted RBP6.66□□□□□ -1.34
NUP88-208ENST00000574087 KLHL18O94889 574 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 ZSCAN22P10073 491 aaPredicted RBP6.66□□□□□ -1.34
NUP88-208ENST00000574087 CPEP16870 476 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 CD40P25942 277 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 ADCY1Q08828 1119 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 STAT4Q14765 748 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 KRTAP19-4Q3LI73 84 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 LHFPL2Q6ZUX7 228 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 ZNF761Q86XN6 746 aaPredicted RBP6.66□□□□□ -1.34
NUP88-208ENST00000574087 DDX42Q86XP3 938 aaKnown RBP eCLIP6.66□□□□□ -1.34
NUP88-208ENST00000574087 ZNF610Q8N9Z0 462 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 CALML6Q8TD86 181 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 ADAMTS17Q8TE56 1095 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 RTF1Q92541 710 aaKnown RBP6.66□□□□□ -1.34
NUP88-208ENST00000574087 SLC5A5Q92911 643 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 YTHDC1Q96MU7 727 aaKnown RBP6.66□□□□□ -1.34
NUP88-208ENST00000574087 SPATA25Q9BR10 227 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 OR10A5Q9H207 317 aa6.66□□□□□ -1.34
NUP88-208ENST00000574087 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.65□□□□□ -1.34
NUP88-208ENST00000574087 LSP1P33241 339 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 SLC6A3Q01959 620 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 TTC38Q5R3I4 469 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 FAM26FQ5R3K3 315 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 BROXQ5VW32 411 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 PHYKPLQ8IUZ5 450 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 NUDT10Q8NFP7 164 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 NUDT11Q96G61 164 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 L2HGDHQ9H9P8 463 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 LUC7LQ9NQ29 371 aaKnown RBP6.65□□□□□ -1.34
NUP88-208ENST00000574087 ATP8A1Q9Y2Q0 1164 aa6.65□□□□□ -1.34
NUP88-208ENST00000574087 H0Y858 1186 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 GPR39O43194 453 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 TRIM13O60858 407 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 ULK1O75385 1050 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 MAFO75444 373 aaPredicted RBP6.64□□□□□ -1.35
NUP88-208ENST00000574087 RGS3P49796 1198 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 ROM1Q03395 351 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 MYBPC3Q14896 1274 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 DDB1Q16531 1140 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 MCTP2Q6DN12 878 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 TXNDC5Q8NBS9 432 aaKnown RBP6.64□□□□□ -1.35
NUP88-208ENST00000574087 WDR66Q8TBY9 1149 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 GPATCH3Q96I76 525 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 ZNF496Q96IT1 587 aaPredicted RBP6.64□□□□□ -1.35
NUP88-208ENST00000574087 BRINP2Q9C0B6 783 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 MS4A5Q9H3V2 200 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 PCDH12Q9NPG4 1184 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 USP36Q9P275 1121 aaKnown RBP6.64□□□□□ -1.35
NUP88-208ENST00000574087 COL4A3BPQ9Y5P4 624 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 PHLDB1Q86UU1 1377 aa6.64□□□□□ -1.35
NUP88-208ENST00000574087 KRTAP9-6A0A140TA67 174 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.63□□□□□ -1.35
NUP88-208ENST00000574087 C9orf118A6NHY6 69 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 APEX1P27695 318 aaKnown RBP6.63□□□□□ -1.35
NUP88-208ENST00000574087 KCNC1P48547 511 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 CD83Q01151 205 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 PTPROQ16827 1216 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 RNF219Q5W0B1 726 aaPredicted RBP6.63□□□□□ -1.35
NUP88-208ENST00000574087 KANSL1Q7Z3B3 1105 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 RASSF3Q86WH2 238 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 MARCH10Q8NA82 808 aaPredicted RBP6.63□□□□□ -1.35
NUP88-208ENST00000574087 ATL2Q8NHH9 583 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 TUBGCP5Q96RT8 1024 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 ZDHHC5Q9C0B5 715 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 TMEM168Q9H0V1 697 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 SEMA4AQ9H3S1 761 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 FTSJ1Q9UET6 329 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 MCM8Q9UJA3 840 aa6.63□□□□□ -1.35
NUP88-208ENST00000574087 LCHNA4D1U4 455 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 PRPF6O94906 941 aaKnown RBP6.62□□□□□ -1.35
NUP88-208ENST00000574087 CYP1A1P04798 512 aaPredicted RBP6.62□□□□□ -1.35
NUP88-208ENST00000574087 SESN3P58005 492 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 TOP3AQ13472 1001 aaPredicted RBP6.62□□□□□ -1.35
NUP88-208ENST00000574087 MOGSQ13724 837 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 RGL3Q3MIN7 710 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 WDR72Q3MJ13 1102 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 TMEM200BQ69YZ2 307 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 SLFN12LQ6IEE8 588 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 SP8Q8IXZ3 490 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 C7orf31Q8N865 590 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 CLRN3Q8NCR9 226 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 ZCRB1Q8TBF4 217 aaKnown RBP6.62□□□□□ -1.35
NUP88-208ENST00000574087 MBD6Q96DN6 1003 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 AJUBAQ96IF1 538 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 KCNC2Q96PR1 638 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 KATNBL1Q9H079 304 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 POFUT1Q9H488 388 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 MSRAQ9UJ68 235 aa6.62□□□□□ -1.35
NUP88-208ENST00000574087 ELL2O00472 640 aaPredicted RBP6.61□□□□□ -1.35
NUP88-208ENST00000574087 NOBOXO60393 691 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 POLD1P28340 1107 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 TMPRSS15P98073 1019 aa6.61□□□□□ -1.35
NUP88-208ENST00000574087 NOLC1Q14978 699 aaKnown RBP eCLIP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms