RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 RNF41Q9H4P4 317 aaPredicted RBP20.88■□□□□ 0.93
CLK3-227ENST00000570296 C2orf71A6NGG8 1288 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 TRIM6-TRIM34B2RNG4 842 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 ZBTB5O15062 677 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 CLASP2O75122 1294 aaKnown RBP20.87■□□□□ 0.93
CLK3-227ENST00000570296 IBSPP21815 317 aaPredicted RBP20.87■□□□□ 0.93
CLK3-227ENST00000570296 PDE4AP27815 886 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 ATXN1P54253 815 aaKnown RBP20.87■□□□□ 0.93
CLK3-227ENST00000570296 HAND2P61296 217 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 TBC1D8BQ0IIM8 1120 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 TRAF1Q13077 416 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 XRRA1Q6P2D8 792 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 SLC24A5Q71RS6 500 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 OTOP3Q7RTS5 596 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 GPR161Q8N6U8 529 aaKnown RBP20.87■□□□□ 0.93
CLK3-227ENST00000570296 MTMR8Q96EF0 704 aa20.87■□□□□ 0.93
CLK3-227ENST00000570296 SP9P0CG40 484 aa20.86■□□□□ 0.93
CLK3-227ENST00000570296 MARK3P27448 753 aa20.86■□□□□ 0.93
CLK3-227ENST00000570296 IQCA1Q86XH1 822 aa20.86■□□□□ 0.93
CLK3-227ENST00000570296 SUMF1Q8NBK3 374 aa20.86■□□□□ 0.93
CLK3-227ENST00000570296 HELLSQ9NRZ9 838 aa20.86■□□□□ 0.93
CLK3-227ENST00000570296 RGS18Q9NS28 235 aa20.86■□□□□ 0.93
CLK3-227ENST00000570296 WNT16Q9UBV4 365 aa20.86■□□□□ 0.93
CLK3-227ENST00000570296 DENND3A2RUS2 1198 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 C9IYK1 514 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 STK25O00506 426 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 MGEA5O60502 916 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 RFX1P22670 979 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 IGBP1P78318 339 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 TMEM62Q0P6H9 643 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 NFX1Q12986 1120 aaKnown RBP20.85■□□□□ 0.93
CLK3-227ENST00000570296 KCNT2Q6UVM3 1135 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 TBC1D10CQ8IV04 446 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 C12orf76Q8N812 135 aaPredicted RBP20.85■□□□□ 0.93
CLK3-227ENST00000570296 GLG1Q92896 1179 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 BORCS6Q96GS4 357 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 ZNF558Q96NG5 402 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 SMARCAD1Q9H4L7 1026 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 KCNK12Q9HB15 430 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 ATP6V0A4Q9HBG4 840 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 RTEL1Q9NZ71 1219 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 PCDHA2Q9Y5H9 948 aa20.85■□□□□ 0.93
CLK3-227ENST00000570296 PRR5-ARHGAP8B1AHC4 643 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 ARHGAP8P85298 464 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 KRT76Q01546 638 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 TMEM266Q2M3C6 531 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 SEPT1Q8WYJ6 367 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 ZBTB10Q96DT7 871 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 ADAM2Q99965 735 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 DCTPP1Q9H773 170 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 TMEM161AQ9NX61 479 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 SPG21Q9NZD8 308 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 IGSF9Q9P2J2 1179 aa20.84■□□□□ 0.93
CLK3-227ENST00000570296 FASNP49327 2511 aaKnown RBP20.83■□□□□ 0.93
CLK3-227ENST00000570296 NEDD4P46934 1319 aa20.83■□□□□ 0.93
CLK3-227ENST00000570296 KINO60870 393 aaKnown RBP20.83■□□□□ 0.93
CLK3-227ENST00000570296 ADRB1P08588 477 aa20.83■□□□□ 0.93
CLK3-227ENST00000570296 INSRRP14616 1297 aa20.83■□□□□ 0.93
CLK3-227ENST00000570296 ODR4Q5SWX8 454 aa20.83■□□□□ 0.93
CLK3-227ENST00000570296 CCDC149Q6ZUS6 474 aa20.83■□□□□ 0.93
CLK3-227ENST00000570296 NME8Q8N427 588 aa20.83■□□□□ 0.93
CLK3-227ENST00000570296 TNPO1Q92973 898 aaKnown RBP20.83■□□□□ 0.93
CLK3-227ENST00000570296 TMEM117Q9H0C3 514 aa20.83■□□□□ 0.93
CLK3-227ENST00000570296 ELAC1Q9H777 363 aaKnown RBP20.83■□□□□ 0.93
CLK3-227ENST00000570296 CDV3Q9UKY7 258 aaKnown RBP20.83■□□□□ 0.93
CLK3-227ENST00000570296 GSTTP1A0A1W2PQM5 241 aa20.82■□□□□ 0.92
CLK3-227ENST00000570296 KRBA1A5PL33 1030 aa20.82■□□□□ 0.92
CLK3-227ENST00000570296 FGFR1P11362 822 aa20.82■□□□□ 0.92
CLK3-227ENST00000570296 BMS1Q14692 1282 aaKnown RBP20.82■□□□□ 0.92
CLK3-227ENST00000570296 C1orf210Q8IVY1 113 aa20.82■□□□□ 0.92
CLK3-227ENST00000570296 RTKNQ9BST9 563 aa20.82■□□□□ 0.92
CLK3-227ENST00000570296 BAZ2BQ9UIF8 2168 aaKnown RBP20.81■□□□□ 0.92
CLK3-227ENST00000570296 HOXA2O43364 376 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 FAM189BP81408 668 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 LMNB2Q03252 620 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 VARS2Q5ST30 1063 aaKnown RBP20.81■□□□□ 0.92
CLK3-227ENST00000570296 NLRX1Q86UT6 975 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 LRRC43Q8N309 656 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 STAG2Q8N3U4 1231 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 ENAHQ8N8S7 591 aaPredicted RBP20.81■□□□□ 0.92
CLK3-227ENST00000570296 ZSCAN10Q96SZ4 725 aaPredicted RBP20.81■□□□□ 0.92
CLK3-227ENST00000570296 TBC1D17Q9HA65 648 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 DLGAP2Q9P1A6 1054 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 NCDNQ9UBB6 729 aa20.81■□□□□ 0.92
CLK3-227ENST00000570296 C2orf16Q68DN1 1984 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 SMIM35A0A1B0GVV1 85 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 KLRF2D3W0D1 207 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 RPS6KA5O75582 802 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 MCMDC2Q4G0Z9 681 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 PCNX4Q63HM2 1172 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 KANK3Q6NY19 840 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 LRRC55Q6ZSA7 311 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 LAMA4Q16363 1823 aa20.8■□□□□ 0.92
CLK3-227ENST00000570296 SPTLC1O15269 473 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 NARSO43776 548 aaKnown RBP20.79■□□□□ 0.92
CLK3-227ENST00000570296 CFHP08603 1231 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 KCNA2P16389 499 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 PBX3P40426 434 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 COL9A2Q14055 689 aaPredicted RBP20.79■□□□□ 0.92
CLK3-227ENST00000570296 NONOQ15233 471 aaKnown RBP eCLIP20.79■□□□□ 0.925e-7■■□□□ 13.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms