RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CYP2R1Q6VVX0 501 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 ARHGAP36Q6ZRI8 547 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 USP51Q70EK9 711 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 CEP68Q76N32 757 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 C16orf59Q7L2K0 433 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 PTRH1Q86Y79 214 aaKnown RBP2.22□□□□□ -2.05
USP3-209ENST00000558925 PALM2Q8IXS6 379 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 C2orf69Q8N8R5 385 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 CLRN3Q8NCR9 226 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 PIP4K2CQ8TBX8 421 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 PLEKHO2Q8TD55 490 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 TMEM169Q96HH4 297 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 SYT3Q9BQG1 590 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 KLC2Q9H0B6 622 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 CABP5Q9NP86 173 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 DLL4Q9NR61 685 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 AASDHPPTQ9NRN7 309 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 C14orf119Q9NWQ9 140 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 ZIM2Q9NZV7 527 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 PPP4R1LQ9P1A2 415 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 NOB1Q9ULX3 412 aaKnown RBP2.22□□□□□ -2.05
USP3-209ENST00000558925 ZKSCAN5Q9Y2L8 839 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 SIT1Q9Y3P8 196 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 TELO2Q9Y4R8 837 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 TIMM13Q9Y5L4 95 aaPredicted RBP2.22□□□□□ -2.05
USP3-209ENST00000558925 TRBV23OR9-2A0A075B6M9 112 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 A0A1W2PQ45 241 aaPredicted RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 A0A1W2PQY0 241 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 C22orf46C9J442 243 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 SCDO00767 359 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 GPR42O15529 346 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 ZEB2O60315 1214 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 NPHS1O60500 1241 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 MAP4K4O95819 1239 aaPredicted RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 MYBL2P10244 700 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 NAT1P18440 290 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 PTX3P26022 381 aaPredicted RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 SARSP49591 514 aaKnown RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 KPNA1P52294 538 aaPredicted RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 EPHB1P54762 984 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 TBX4P57082 545 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 PRR5P85299 388 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 IRF9Q00978 393 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 PIN1Q13526 163 aaPredicted RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 FHL2Q14192 279 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 ODF1Q14990 250 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 NR1I3Q14994 352 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 PCBP2Q15366 365 aaKnown RBP eCLIP2.21□□□□□ -2.06
USP3-209ENST00000558925 CRY1Q16526 586 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 PTPN21Q16825 1174 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 INAVAQ3KP66 663 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 HSP90AB2PQ58FF8 381 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 HABP4Q5JVS0 413 aaKnown RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 SPDYAQ5MJ70 313 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 SYDE2Q5VT97 1194 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 BROXQ5VW32 411 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 ESRP1Q6NXG1 681 aaKnown RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 ZNF585AQ6P3V2 769 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 OTOP1Q7RTM1 612 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 OTOP3Q7RTS5 596 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 B3GNT8Q7Z7M8 397 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 C14orf80Q86SX3 495 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 ZBTB46Q86UZ6 589 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 KIF18BQ86Y91 864 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 NOSTRINQ8IVI9 506 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 Q8N1Y9 231 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 KIAA1958Q8N8K9 716 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 PCSK5Q92824 1860 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 SLC5A5Q92911 643 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 CHFRQ96EP1 664 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 TRMT2BQ96GJ1 504 aaKnown RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 ELF4Q99607 663 aaPredicted RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 MTA3Q9BTC8 594 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 BOCQ9BWV1 1114 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 RNF38Q9H0F5 515 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 PUS7LQ9H0K6 701 aaKnown RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 IKZF4Q9H2S9 585 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 TOPORSQ9NS56 1045 aaPredicted RBP2.21□□□□□ -2.06
USP3-209ENST00000558925 TCEAL9Q9UHQ7 104 aa2.21□□□□□ -2.06
USP3-209ENST00000558925 SLC12A8A0AV02 714 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 NPIPB8E9PQR5 432 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 H7BY64 318 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 H7C1D1 291 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 SLC27A2O14975 620 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 SRGAP3O43295 1099 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 PCDHGA12O60330 932 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 NTRK1P04629 796 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 CYBBP04839 570 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 APPP05067 770 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 THBS2P35442 1172 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 RGS19P49795 217 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 KIF11P52732 1056 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 SCAND1P57086 179 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 INHBEP58166 350 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 NANOS3P60323 173 aaKnown RBP2.2□□□□□ -2.06
USP3-209ENST00000558925 LACTBP83111 547 aaPredicted RBP2.2□□□□□ -2.06
USP3-209ENST00000558925 SMAD4Q13485 552 aaKnown RBP2.2□□□□□ -2.06
USP3-209ENST00000558925 TCIRG1Q13488 830 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 PDCD1Q15116 288 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 TERF2Q15554 542 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms