RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CYP2C19P33261 490 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 POLR2FP61218 127 aaKnown RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 KCNH2Q12809 1159 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 PABPC4Q13310 644 aaKnown RBP eCLIP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 PPP2R5CQ13362 524 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 CASP8Q14790 479 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 SLC15A2Q16348 729 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 SLC18A3Q16572 532 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 HGSNATQ68CP4 663 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 RSBN1LQ6PCB5 846 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 KRT26Q7Z3Y9 468 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 SFR1Q86XK3 245 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 RTKN2Q8IZC4 609 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 C7orf43Q8WVR3 580 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 GJA10Q969M2 543 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 EXOC4Q96A65 974 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 CAPZA3Q96KX2 299 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 EIF2AK1Q9BQI3 630 aaKnown RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 GANQ9H2C0 597 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 RANBP17Q9H2T7 1088 aaKnown RBP7.98□□□□□ -1.13
VPS13C-206ENST00000558338 ST7Q9NRC1 585 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 PCDHAC2Q9Y5I4 1007 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 CAPN6Q9Y6Q1 641 aa7.98□□□□□ -1.13
VPS13C-206ENST00000558338 RBBP6Q7Z6E9 1792 aaKnown RBP7.97□□□□□ -1.13
VPS13C-206ENST00000558338 FRMPD4Q14CM0 1322 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 IGLV3-22A0A075B6J6 115 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 NPHP3-ACAD11A0A0J9YXS1 232 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 A0A0U1RQG5 324 aaPredicted RBP7.97□□□□□ -1.13
VPS13C-206ENST00000558338 POLR3GO15318 223 aaPredicted RBP7.97□□□□□ -1.13
VPS13C-206ENST00000558338 NOL4O94818 638 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 GCNT3O95395 438 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 MOCS3O95396 460 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 PRELPP51888 382 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 KLHL30Q0D2K2 578 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 RAPGEF1Q13905 1077 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 DLGAP5Q15398 846 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 SHROOM1Q2M3G4 852 aaPredicted RBP7.97□□□□□ -1.13
VPS13C-206ENST00000558338 GLE1Q53GS7 698 aaKnown RBP7.97□□□□□ -1.13
VPS13C-206ENST00000558338 LRCH2Q5VUJ6 765 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 VPS36Q86VN1 386 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 OGFOD1Q8N543 542 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 GOLGA5Q8TBA6 731 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 SLC5A5Q92911 643 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 GLMNQ92990 594 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 OSBPL9Q96SU4 736 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 MKNK1Q9BUB5 465 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 FGFBP2Q9BYJ0 223 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 NLRC4Q9NPP4 1024 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 FEM1BQ9UK73 627 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 ODF2LQ9ULJ1 636 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 ZBTB21Q9ULJ3 1066 aa7.97□□□□□ -1.13
VPS13C-206ENST00000558338 GRID2IPA4D2P6 1211 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 CES2O00748 559 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 OPLAHO14841 1288 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 NKRFO15226 690 aaKnown RBP eCLIP7.96□□□□□ -1.13
VPS13C-206ENST00000558338 GAS7O60861 476 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 GFPT2O94808 682 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 NR3C1P04150 777 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 TNFRSF8P28908 595 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 GFPT1Q06210 699 aaPredicted RBP7.96□□□□□ -1.13
VPS13C-206ENST00000558338 TNIP1Q15025 636 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 NAB2Q15742 525 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 EXOC3L4Q17RC7 722 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 GBP6Q6ZN66 633 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 FAM83AQ86UY5 434 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 CREG2Q8IUH2 290 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 GOLGA6L1Q8N7Z2 621 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 MTMR14Q8NCE2 650 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 PRMT6Q96LA8 375 aaPredicted RBP7.96□□□□□ -1.13
VPS13C-206ENST00000558338 SPAG5Q96R06 1193 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 P2RX7Q99572 595 aaKnown RBP7.96□□□□□ -1.13
VPS13C-206ENST00000558338 TEKT3Q9BXF9 490 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 BHMT2Q9H2M3 363 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 VCPKMTQ9H867 229 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 MLXIPQ9HAP2 919 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 STK32BQ9NY57 414 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.96□□□□□ -1.13
VPS13C-206ENST00000558338 CALCOCO1Q9P1Z2 691 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 PNMA2Q9UL42 364 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 TFR2Q9UP52 801 aa7.96□□□□□ -1.13
VPS13C-206ENST00000558338 A0A1W2PRG0 241 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 YDJCA8MPS7 323 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 MEIS1O00470 390 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 SRGAP2O75044 1071 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 PSMD10O75832 226 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 FLOT1O75955 427 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 CFBP00751 764 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 VIL1P09327 827 aaKnown RBP7.96□□□□□ -1.14
VPS13C-206ENST00000558338 SLURP2P0DP57 97 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 CHRNA5P30532 468 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 PSMC2P35998 433 aaKnown RBP7.96□□□□□ -1.14
VPS13C-206ENST00000558338 PRKCIP41743 596 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 TNNT3P45378 269 aaPredicted RBP7.96□□□□□ -1.14
VPS13C-206ENST00000558338 AARSP49588 968 aaKnown RBP eCLIP7.96□□□□□ -1.14
VPS13C-206ENST00000558338 NAP1L1P55209 391 aaKnown RBP7.96□□□□□ -1.14
VPS13C-206ENST00000558338 SNAP25P60880 206 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 RASSF7Q02833 373 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 ALCAMQ13740 583 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 CFAP221Q4G0U5 840 aa7.96□□□□□ -1.14
VPS13C-206ENST00000558338 RINT1Q6NUQ1 792 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms