RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 GPCPD1Q9NPB8 672 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 DDX20Q9UHI6 824 aaKnown RBP17.73■□□□□ 0.43
SHMT2-231ENST00000557433 FOCADQ5VW36 1801 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 FAM187AA6NFU0 413 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 TRIM37O94972 964 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 CCDC172P0C7W6 258 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 MAP2K2P36507 400 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 STAT1P42224 750 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 ENOX2Q16206 610 aaKnown RBP17.72■□□□□ 0.43
SHMT2-231ENST00000557433 NFIL3Q16649 462 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 ARSHQ5FYA8 562 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 GKAP1Q5VSY0 366 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-231ENST00000557433 SYT2Q8N9I0 419 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-231ENST00000557433 MYH7BA7E2Y1 1941 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 MYH4Q9Y623 1939 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 GOLGA6L10A0A0M3HER8 536 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 POTEB3A0JP26 581 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 POTECB2RU33 542 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 F8VZ95 297 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 PPP1R11O60927 126 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-231ENST00000557433 GIT2Q14161 759 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 POTEBQ6S5H4 581 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 LRRC47Q8N1G4 583 aaKnown RBP17.72■□□□□ 0.43
SHMT2-231ENST00000557433 TATDN2Q93075 761 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 TLCD1Q96CP7 247 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 CCDC114Q96M63 670 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 PSMD1Q99460 953 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 AP1M1Q9BXS5 423 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 DDX47Q9H0S4 455 aaKnown RBP17.72■□□□□ 0.43
SHMT2-231ENST00000557433 DNM3Q9UQ16 869 aa17.72■□□□□ 0.43
SHMT2-231ENST00000557433 DAPK3O43293 454 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 KCNQ2O43526 872 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 TMEM253P0C7T8 217 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 ACTN1P12814 892 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 RPA1P27694 616 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 DRG2P55039 364 aaKnown RBP17.71■□□□□ 0.43
SHMT2-231ENST00000557433 POU5F1Q01860 360 aaKnown RBP17.71■□□□□ 0.43
SHMT2-231ENST00000557433 DAAM2Q86T65 1068 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 RBM46Q8TBY0 533 aaKnown RBP17.71■□□□□ 0.43
SHMT2-231ENST00000557433 RFFLQ8WZ73 363 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 SEC16BQ96JE7 1060 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 TXLNGYQ9BZA5 131 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 CARD9Q9H257 536 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 KDM4CQ9H3R0 1056 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.71■□□□□ 0.43
SHMT2-231ENST00000557433 SRP68Q9UHB9 627 aaKnown RBP17.71■□□□□ 0.43
SHMT2-231ENST00000557433 SUGT1Q9Y2Z0 365 aa17.71■□□□□ 0.43
SHMT2-231ENST00000557433 PPP1R12BO60237 982 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-231ENST00000557433 NUDT17P0C025 328 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 HSPA6P17066 643 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 PTENP60484 403 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 BYSLQ13895 437 aaKnown RBP17.7■□□□□ 0.42
SHMT2-231ENST00000557433 DHX34Q14147 1143 aaKnown RBP17.7■□□□□ 0.42
SHMT2-231ENST00000557433 KRT71Q3SY84 523 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 FMO2Q99518 471 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 NEUROG2Q9H2A3 272 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 SLC40A1Q9NP59 571 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 SIX2Q9NPC8 291 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 AMACRQ9UHK6 382 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 NOVA2Q9UNW9 492 aaKnown RBP17.7■□□□□ 0.42
SHMT2-231ENST00000557433 DDX3XO00571 662 aaKnown RBP eCLIP17.7■□□□□ 0.428e-15■■□□□ 14.3
SHMT2-231ENST00000557433 MED24O75448 989 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 NR3C1P04150 777 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 AKR1B1P15121 316 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 GAP43P17677 238 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 DHX9Q08211 1270 aaKnown RBP17.7■□□□□ 0.42
SHMT2-231ENST00000557433 ANKRD20A8PQ5CZ79 823 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 DPP8Q6V1X1 898 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-231ENST00000557433 DDX42Q86XP3 938 aaKnown RBP eCLIP17.7■□□□□ 0.42
SHMT2-231ENST00000557433 SLC30A5Q8TAD4 765 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 RAPGEF5Q92565 580 aa17.7■□□□□ 0.42
SHMT2-231ENST00000557433 RTCBQ9Y3I0 505 aaKnown RBP17.7■□□□□ 0.42
SHMT2-231ENST00000557433 NPHP3-ACAD11A0A0J9YXS1 232 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 EIF3DO15371 548 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHMT2-231ENST00000557433 Q4G0T1 1027 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 MFSD14BQ5SR56 506 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 OR2W6PQ8NHA6 318 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 SLC35C1Q96A29 364 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 PGM2Q96G03 612 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 FAM20AQ96MK3 541 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 MKNK1Q9BUB5 465 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 ANO3Q9BYT9 981 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 ZHX3Q9H4I2 956 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 KANSL2Q9H9L4 492 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 GCNT4Q9P109 453 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 BCCIPQ9P287 314 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHMT2-231ENST00000557433 RASAL2Q9UJF2 1139 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 GGA1Q9UJY5 639 aa17.69■□□□□ 0.42
SHMT2-231ENST00000557433 CCDC169A6NNP5 214 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 TTI1O43156 1089 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 MAGOHP61326 146 aaKnown RBP17.68■□□□□ 0.42
SHMT2-231ENST00000557433 NFIXQ14938 502 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 NBPF9Q3BBW0 867 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 PREPLQ4J6C6 727 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-231ENST00000557433 SFR1Q86XK3 245 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 MAGOHBQ96A72 148 aaKnown RBP17.68■□□□□ 0.42
SHMT2-231ENST00000557433 CHMP6Q96FZ7 201 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 SGSM3Q96HU1 749 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 STK33Q9BYT3 514 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 OLFML3Q9NRN5 406 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms