RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 NAP1L5Q96NT1 182 aaPredicted RBP6.33□□□□□ -1.4
SRP54-211ENST00000556445 SENP7Q9BQF6 1050 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 BCAS3Q9H6U6 928 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 SNTG2Q9NY99 539 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 MARCH2Q9P0N8 246 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 DBR1Q9UK59 544 aaKnown RBP6.33□□□□□ -1.4
SRP54-211ENST00000556445 XRN1Q8IZH2 1706 aaKnown RBP6.33□□□□□ -1.4
SRP54-211ENST00000556445 SHPRHQ149N8 1683 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 PNPLA6Q8IY17 1366 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 MEFVO15553 781 aaPredicted RBP6.32□□□□□ -1.4
SRP54-211ENST00000556445 DIAPH1O60610 1272 aaKnown RBP6.32□□□□□ -1.4
SRP54-211ENST00000556445 ASGR2P07307 311 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 U2AF1L5P0DN76 240 aaPredicted RBP6.32□□□□□ -1.4
SRP54-211ENST00000556445 PFKLP17858 780 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 GNALP38405 381 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 TNNT2P45379 298 aaPredicted RBP6.32□□□□□ -1.4
SRP54-211ENST00000556445 LIMS1P48059 325 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 GYS2P54840 703 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 RRP1P56182 461 aaKnown RBP6.32□□□□□ -1.4
SRP54-211ENST00000556445 U2AF1Q01081 240 aaKnown RBP eCLIP6.32□□□□□ -1.4
SRP54-211ENST00000556445 SLFN5Q08AF3 891 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 KCNAB2Q13303 367 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 RASA3Q14644 834 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 TARBP2Q15633 366 aaKnown RBP6.32□□□□□ -1.4
SRP54-211ENST00000556445 TCERG1LQ5VWI1 586 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 NLRP10Q86W26 655 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 TMEM151BQ8IW70 566 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 USP33Q8TEY7 942 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 DIO2Q92813 273 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 PEX11GQ96HA9 241 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 CEP89Q96ST8 783 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 RNF38Q9H0F5 515 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 KANSL2Q9H9L4 492 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 FBXL7Q9UJT9 491 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 SIT1Q9Y3P8 196 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 TIMM13Q9Y5L4 95 aaPredicted RBP6.32□□□□□ -1.4
SRP54-211ENST00000556445 TOPAZ1Q8N9V7 1692 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 PTPRUQ92729 1446 aa6.32□□□□□ -1.4
SRP54-211ENST00000556445 MAPK8IP3Q9UPT6 1336 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.31□□□□□ -1.4
SRP54-211ENST00000556445 AGRPO00253 132 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 CT47B1P0C2W7 299 aaPredicted RBP6.31□□□□□ -1.4
SRP54-211ENST00000556445 PMLP29590 882 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 KCNJ6P48051 423 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 MASP1P48740 699 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 AFF3P51826 1226 aaKnown RBP6.31□□□□□ -1.4
SRP54-211ENST00000556445 RPL11P62913 178 aaKnown RBP6.31□□□□□ -1.4
SRP54-211ENST00000556445 DHX8Q14562 1220 aaKnown RBP6.31□□□□□ -1.4
SRP54-211ENST00000556445 SLC9A5Q14940 896 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 LRP10Q7Z4F1 713 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 PPIL6Q8IXY8 311 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 TRMT2AQ8IZ69 625 aaKnown RBP6.31□□□□□ -1.4
SRP54-211ENST00000556445 TCP11L2Q8N4U5 519 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 RCBTB1Q8NDN9 531 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 SH3TC2Q8TF17 1288 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 APPBP2Q92624 585 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 ALG3Q92685 438 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 DEPDC7Q96QD5 511 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 HOMER2Q9NSB8 354 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 BTG4Q9NY30 223 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 NUDT5Q9UKK9 219 aa6.31□□□□□ -1.4
SRP54-211ENST00000556445 CHD2O14647 1828 aaKnown RBP6.31□□□□□ -1.4
SRP54-211ENST00000556445 MAP2P11137 1827 aaKnown RBP6.3□□□□□ -1.4
SRP54-211ENST00000556445 NKTRP30414 1462 aaKnown RBP6.3□□□□□ -1.4
SRP54-211ENST00000556445 CDK12Q9NYV4 1490 aaPredicted RBP6.3□□□□□ -1.4
SRP54-211ENST00000556445 FAM221BA6H8Z2 402 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 C22orf46C9J442 243 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 TRIM13O60858 407 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 LCP1P13796 627 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 BDNFP23560 247 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 FPR2P25090 351 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 LTBRP36941 435 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 BCL6P41182 706 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 MC3RP41968 323 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 CALD1Q05682 793 aaKnown RBP6.3□□□□□ -1.4
SRP54-211ENST00000556445 MAP4K2Q12851 820 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 TTLL10Q6ZVT0 673 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.3□□□□□ -1.4
SRP54-211ENST00000556445 RAVER1Q8IY67 606 aaKnown RBP6.3□□□□□ -1.4
SRP54-211ENST00000556445 ST13P5Q8NFI4 369 aaPredicted RBP6.3□□□□□ -1.4
SRP54-211ENST00000556445 TSR2Q969E8 191 aaKnown RBP6.3□□□□□ -1.4
SRP54-211ENST00000556445 PWWP2AQ96N64 755 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 MSRB2Q9Y3D2 182 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 NPFFR2Q9Y5X5 522 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 X6R8D5 127 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 USP6P35125 1406 aa6.3□□□□□ -1.4
SRP54-211ENST00000556445 ACEP12821 1306 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 IL16Q14005 1332 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 TTC21BQ7Z4L5 1316 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 COL3A1P02461 1466 aaPredicted RBP6.29□□□□□ -1.4
SRP54-211ENST00000556445 IQSEC2Q5JU85 1478 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 EXOC5O00471 708 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 DLX3O60479 287 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 NPHP4O75161 1426 aaPredicted RBP6.29□□□□□ -1.4
SRP54-211ENST00000556445 ZBTB7AO95365 584 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 LDHAP00338 332 aaKnown RBP6.29□□□□□ -1.4
SRP54-211ENST00000556445 PLA2G1BP04054 148 aaKnown RBP6.29□□□□□ -1.4
SRP54-211ENST00000556445 NCAM1P13591 858 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 FOXO4P98177 505 aa6.29□□□□□ -1.4
SRP54-211ENST00000556445 CAP1Q01518 475 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms