RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SMIM35A0A1B0GVV1 85 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 ABHD14A-ACY1A0A1B0GW23 586 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 LCHNA4D1U4 455 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 MARCH6O60337 910 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 BAIAP3O94812 1187 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 SFNP31947 248 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 MCM7P33993 719 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 KCNJ6P48051 423 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 SPIRE1Q08AE8 756 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 PPP2R5CQ13362 524 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 IKBKEQ14164 716 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 SAFBQ15424 915 aaKnown RBP eCLIP13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 ZNF174Q15697 407 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 FBXO47Q5MNV8 452 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 NCAPH2Q6IBW4 605 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 RSPH3Q86UC2 560 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 LRRC71Q8N4P6 559 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 METTL13Q8N6R0 699 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 ZNF579Q8NAF0 562 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 MYLIPQ8WY64 445 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 SEPT8Q92599 483 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 FAM20AQ96MK3 541 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 IFIH1Q9BYX4 1025 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 MSRAQ9UJ68 235 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 GINS2Q9Y248 185 aa13.04□□□□□ -0.32
CCDC88C-208ENST00000554165 DDX11L8A8MPP1 907 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 ZBTB39O15060 712 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 VTNP04004 478 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 CA3P07451 260 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 GJB2P29033 226 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 CD52P31358 61 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 DRP2Q13474 957 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 TARBP2Q15633 366 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 CALCRLQ16602 461 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 TMEM266Q2M3C6 531 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 PLA2G4FQ68DD2 849 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 RDM1Q8NG50 284 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 TMEM40Q8WWA1 233 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 MTMR9Q96QG7 549 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 CEP89Q96ST8 783 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 SLC9A7Q96T83 725 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 CELF4Q9BZC1 486 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 FOXP1Q9H334 677 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 CERS4Q9HA82 394 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 NRBP2Q9NSY0 501 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 PCDHA11Q9Y5I1 949 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 TRPV2Q9Y5S1 764 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 COL1A2P08123 1366 aa13.03□□□□□ -0.32
CCDC88C-208ENST00000554165 COL6A3P12111 3177 aa13.02□□□□□ -0.32
CCDC88C-208ENST00000554165 LOXHD1Q8IVV2 1947 aa13.02□□□□□ -0.32
CCDC88C-208ENST00000554165 MICAL3Q7RTP6 2002 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 A0A087WWV3 80 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 TBX3O15119 743 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 NEMFO60524 1076 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 TXKP42681 527 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 TOB1P50616 345 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 NPEPPSP55786 919 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 CYP4A11Q02928 519 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 CTTNQ14247 550 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 RAB30Q15771 203 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 KIZQ2M2Z5 673 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 MTERF2Q49AM1 385 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 EFCAB12Q6NXP0 572 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 ANO5Q75V66 913 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 RTN4RL1Q86UN2 441 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 NOSTRINQ8IVI9 506 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 MYOCDQ8IZQ8 938 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 LINC01465Q8N7H1 131 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 PHOSPHO2Q8TCD6 241 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 LINC01599Q8WXQ3 324 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 TNPO1Q92973 898 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 DYDC2Q96IM9 177 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 FAM167AQ96KS9 214 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 NAP1L4Q99733 375 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 PRDM12Q9H4Q4 367 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 SUGCTQ9HAC7 445 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 SEPT9Q9UHD8 586 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 CDH23Q9H251 3354 aa13.02□□□□□ -0.33
CCDC88C-208ENST00000554165 EPOPA6NHQ4 379 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 RFXAPO00287 272 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 TLL1O43897 1013 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 GPR32O75388 356 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 UPP2O95045 317 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 BAG4O95429 457 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 U2AF2P26368 475 aaKnown RBP eCLIP13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 QARSP47897 775 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 PSMC5P62195 406 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 EPHA7Q15375 998 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 XKR3Q5GH77 459 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 TTC38Q5R3I4 469 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 IER5Q5VY09 327 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 PPP2R2DQ66LE6 453 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 TSHZ1Q6ZSZ6 1077 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 SLFN12Q8IYM2 578 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 ZBED2Q9BTP6 218 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 NIFKQ9BYG3 293 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 TMX1Q9H3N1 280 aa13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 TTC12Q9H892 705 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-208ENST00000554165 SLC28A3Q9HAS3 691 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms