RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ZNF396Q96N95 335 aaPredicted RBP5.75□□□□□ -1.49
VTI1B-202ENST00000553619 OSMRQ99650 979 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 FAM83CQ9BQN1 747 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 KIAA1683Q9H0B3 1180 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 RNF208Q9H0X6 261 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 RIOX1Q9H6W3 641 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 VCPKMTQ9H867 229 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 TMOD4Q9NZQ9 345 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 FEM1BQ9UK73 627 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 CFAP45Q9UL16 551 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 ZHX2Q9Y6X8 837 aa5.75□□□□□ -1.49
VTI1B-202ENST00000553619 SIPA1L1O43166 1804 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 GREB1LQ9C091 1923 aaPredicted RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 VPS37CA5D8V6 355 aaPredicted RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 TMEM232C9JQI7 657 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 ADM5C9JUS6 153 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 H3BRB1 525 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 CXCL11O14625 94 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 EREGO14944 169 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 WDR46O15213 610 aaKnown RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 NDUFB5O43674 189 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 JAK2O60674 1132 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 TNFRSF21O75509 655 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 F13A1P00488 732 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 SCG2P13521 617 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 FDPSP14324 419 aaKnown RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 NCLP19338 710 aaKnown RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 GRIK1P39086 918 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 STAT2P52630 851 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 BACE1P56817 501 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 NLRP5P59047 1200 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 C19orf57Q0VDD7 668 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 ST3GAL1Q11201 340 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 SPP2Q13103 211 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 PABPC4Q13310 644 aaKnown RBP eCLIP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 PRKG1Q13976 671 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 IKBKEQ14164 716 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 PFKFB3Q16875 520 aaPredicted RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 KRT40Q6A162 431 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 BTNL9Q6UXG8 535 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 BRAPQ7Z569 592 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 ERO1BQ86YB8 467 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 SIAH1Q8IUQ4 282 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 TEX2Q8IWB9 1127 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 ADGRF4Q8IZF3 695 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 LRRC47Q8N1G4 583 aaKnown RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 TMEM102Q8N9M5 508 aaPredicted RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 PRPF38AQ8NAV1 312 aaKnown RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 BICD2Q8TD16 824 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 BSNDQ8WZ55 320 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 PHKBQ93100 1093 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 ARID3AQ99856 593 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 GLIS2Q9BZE0 524 aaPredicted RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 TUT1Q9H6E5 874 aaKnown RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 GOLGA2P5Q9HBQ8 144 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 VAT1LQ9HCJ6 419 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 C6orf50Q9HD87 102 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 HOXC10Q9NYD6 342 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 EGFL7Q9UHF1 273 aa5.74□□□□□ -1.49
VTI1B-202ENST00000553619 SCAF8Q9UPN6 1271 aaKnown RBP5.74□□□□□ -1.49
VTI1B-202ENST00000553619 ZBTB5O15062 677 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 ZBED4O75132 1171 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 PLEKHA8P1O95397 391 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 NDUFB10O96000 172 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 GOLGA8HP0CJ92 632 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 NPR3P17342 541 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 KRT2P35908 639 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 MRPL12P52815 198 aaKnown RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 KRT85P78386 507 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 RRP1BQ14684 758 aaKnown RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 SGO2Q562F6 1265 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 SYDE2Q5VT97 1194 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 MAP1SQ66K74 1059 aaPredicted RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 CLEC17AQ6ZS10 378 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 KCTD1Q719H9 257 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 FASTKD5Q7L8L6 764 aaKnown RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 VN1R5Q7Z5H4 357 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 DTX1Q86Y01 620 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 SAMD3Q8N6K7 520 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 ACER1Q8TDN7 264 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 TNPO1Q92973 898 aaKnown RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 ZKSCAN4Q969J2 545 aaPredicted RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 NXPE3Q969Y0 559 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 AMNQ9BXJ7 453 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 UBA5Q9GZZ9 404 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 MAF1Q9H063 256 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 FOXP1Q9H334 677 aaPredicted RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 GBA2Q9HCG7 927 aaPredicted RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 MTMR6Q9Y217 621 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 HIF3AQ9Y2N7 669 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 AFG3L2Q9Y4W6 797 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 ATAD5Q96QE3 1844 aa5.73□□□□□ -1.49
VTI1B-202ENST00000553619 BAZ2BQ9UIF8 2168 aaKnown RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 FRMPD2Q68DX3 1309 aaPredicted RBP5.73□□□□□ -1.49
VTI1B-202ENST00000553619 A0A1W2PRG0 241 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 ESYT2A0FGR8 921 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 GOLGA6L4A6NEF3 574 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 SMCO2A6NFE2 343 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 SOX1O00570 391 aaPredicted RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms