RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 SNX29Q8TEQ0 813 aa18.16■□□□□ 0.5
CHMP1A-209ENST00000550872 SH2D3AQ9BRG2 576 aa18.16■□□□□ 0.5
CHMP1A-209ENST00000550872 PCDHA2Q9Y5H9 948 aa18.16■□□□□ 0.5
CHMP1A-209ENST00000550872 PP2D1A8MPX8 630 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 PITPNM1O00562 1244 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 ZBTB39O15060 712 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 MAGEB2O15479 319 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 CKBP12277 381 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 CDC25AP30304 524 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 MAGEA10P43363 369 aaPredicted RBP18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 NASPP49321 788 aaPredicted RBP18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 NPEPPSP55786 919 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 NUCB2P80303 420 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 TARBP2Q15633 366 aaKnown RBP18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 TRIM71Q2Q1W2 868 aaKnown RBP18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 PLA2G4FQ68DD2 849 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 MFSD5Q6N075 450 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 RSPH3Q86UC2 560 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 TMEM199Q8N511 208 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 DNAJB3Q8WWF6 145 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 CEP170P1Q96L14 293 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 FAM49AQ9H0Q0 323 aaPredicted RBP18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 TSHZ2Q9NRE2 1034 aa18.15■□□□□ 0.5
CHMP1A-209ENST00000550872 A0A087WWV3 80 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 SMIM35A0A1B0GVV1 85 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 A0A1W2PPC1 479 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 C22orf31O95567 290 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 SELPP16109 830 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 DNM1Q05193 864 aaKnown RBP18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 RBL2Q08999 1139 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 TBC1D8BQ0IIM8 1120 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 XKR9Q5GH70 373 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 ZNF618Q5T7W0 954 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 ATL3Q6DD88 541 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 METTL13Q8N6R0 699 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 PIGOQ8TEQ8 1089 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 SCLYQ96I15 445 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 NACC1Q96RE7 527 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 WNT8AQ9H1J5 351 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 CYP26B1Q9NR63 512 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 RBM19Q9Y4C8 960 aaKnown RBP18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 ATP6V1DQ9Y5K8 247 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 EVPLQ92817 2033 aa18.14■□□□□ 0.49
CHMP1A-209ENST00000550872 IQCF3P0C7M6 154 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 XRCC6P12956 609 aaKnown RBP eCLIP18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 CSF2RAP15509 400 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 MUTP22033 750 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 DDIT3P35638 169 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 LONP1P36776 959 aaKnown RBP18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 GRIN1Q05586 938 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 FPGSQ05932 587 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 ZRSR1Q15695 479 aaKnown RBP18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 EFCAB12Q6NXP0 572 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 POTEGQ6S5H5 508 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 LRRC8DQ7L1W4 858 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 ZNF579Q8NAF0 562 aaKnown RBP18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 LINC00301Q8NCQ3 95 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 AK8Q96MA6 479 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 SUGCTQ9HAC7 445 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 ANKEF1Q9NU02 776 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 FBXO2Q9UK22 296 aaPredicted RBP18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 CFAP45Q9UL16 551 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 KIAA1024Q9UPX6 916 aa18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 SRPRBQ9Y5M8 271 aaKnown RBP18.13■□□□□ 0.49
CHMP1A-209ENST00000550872 LAMA3Q16787 3333 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 MYH15Q9Y2K3 1946 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 RSPH10B2B2RC85 870 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 SPTLC2O15270 562 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 CAND2O75155 1236 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 YEATS4O95619 227 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 RPLP2P05387 115 aaKnown RBP18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 CTSHP09668 335 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 RSPH10BP0C881 870 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 UBA7P41226 1012 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 PPIGQ13427 754 aaKnown RBP eCLIP18.12■□□□□ 0.499e-7■■■□□ 16.3
CHMP1A-209ENST00000550872 ECM1Q16610 540 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 RPAINQ86UA6 219 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 NME8Q8N427 588 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 CCDC43Q96MW1 224 aaKnown RBP18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 CEP89Q96ST8 783 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 GDF15Q99988 308 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 MMTAG2Q9BU76 263 aaKnown RBP18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 PPME1Q9Y570 386 aa18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 MORC2Q9Y6X9 1032 aaPredicted RBP18.12■□□□□ 0.49
CHMP1A-209ENST00000550872 NCLP19338 710 aaKnown RBP18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 TMOD1P28289 359 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 CLCN3P51790 818 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 CABP7Q86V35 215 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 EXOC8Q8IYI6 725 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 KIAA0319LQ8IZA0 1049 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 LRRC71Q8N4P6 559 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 KRI1Q8N9T8 703 aaKnown RBP18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 CDK5RAP3Q96JB5 506 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 CLIC6Q96NY7 704 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 JPH2Q9BR39 696 aaPredicted RBP18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 CSRNP2Q9H175 543 aa18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 DDX19AQ9NUU7 478 aaKnown RBP18.11■□□□□ 0.49
CHMP1A-209ENST00000550872 LTBP2Q14767 1821 aa18.1■□□□□ 0.49
CHMP1A-209ENST00000550872 KDM3AQ9Y4C1 1321 aa18.1■□□□□ 0.49
CHMP1A-209ENST00000550872 PPP6R2O75170 966 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms