RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 NRCAMQ92823 1304 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 KAT6AQ92794 2004 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 C17orf102A2RUQ5 167 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 GADD45BO75293 160 aaPredicted RBP23.66■■□□□ 1.38
VPS29-206ENST00000549578 CDK7P50613 346 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 XKR9Q5GH70 373 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 OTUD6AQ7L8S5 288 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 FSIP1Q8NA03 581 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 CEP170P1Q96L14 293 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 CYP26B1Q9NR63 512 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 ANKEF1Q9NU02 776 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 DNM3Q9UQ16 869 aa23.66■■□□□ 1.38
VPS29-206ENST00000549578 PFKFB1P16118 471 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 HOXC8P31273 242 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 RARRES1P49788 294 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 SNX17Q15036 470 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 TARBP2Q15633 366 aaKnown RBP23.65■■□□□ 1.38
VPS29-206ENST00000549578 LRRC26Q2I0M4 334 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 TRIM60Q495X7 471 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 ZNF484Q5JVG2 852 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 MARCH8Q5T0T0 291 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 RRAGBQ5VZM2 374 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 CCDC43Q96MW1 224 aaKnown RBP23.65■■□□□ 1.38
VPS29-206ENST00000549578 GOLPH3LQ9H4A5 285 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 TRMT13Q9NUP7 481 aaKnown RBP23.65■■□□□ 1.38
VPS29-206ENST00000549578 ARID2Q68CP9 1835 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 COL1A2P08123 1366 aa23.65■■□□□ 1.38
VPS29-206ENST00000549578 PQBP1O60828 265 aaKnown RBP23.64■■□□□ 1.38
VPS29-206ENST00000549578 PRPF40AO75400 957 aaKnown RBP23.64■■□□□ 1.38
VPS29-206ENST00000549578 XRCC6P12956 609 aaKnown RBP eCLIP23.64■■□□□ 1.38
VPS29-206ENST00000549578 PTPN11Q06124 597 aaPredicted RBP23.64■■□□□ 1.38
VPS29-206ENST00000549578 MRPS27Q92552 414 aaKnown RBP23.64■■□□□ 1.38
VPS29-206ENST00000549578 CEP89Q96ST8 783 aa23.64■■□□□ 1.38
VPS29-206ENST00000549578 TRPV6Q9H1D0 765 aa23.64■■□□□ 1.38
VPS29-206ENST00000549578 BHMT2Q9H2M3 363 aa23.64■■□□□ 1.38
VPS29-206ENST00000549578 DBR1Q9UK59 544 aaKnown RBP23.64■■□□□ 1.38
VPS29-206ENST00000549578 KCNH3Q9ULD8 1083 aa23.64■■□□□ 1.38
VPS29-206ENST00000549578 TRIP12Q14669 1992 aaPredicted RBP23.64■■□□□ 1.38
VPS29-206ENST00000549578 RRN3P2A6NIE6 340 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 TREHO43280 583 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 B4GALT4O60513 344 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 EYA4O95677 639 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 ADAM17P78536 824 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 NAALADL2Q58DX5 795 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 C1orf53Q5VUE5 145 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 CCDC73Q6ZRK6 1079 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 BMP2KQ9NSY1 1161 aaPredicted RBP23.64■■□□□ 1.37
VPS29-206ENST00000549578 BLOC1S4Q9NUP1 217 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 TUBE1Q9UJT0 475 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 HPSEQ9Y251 543 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 ATP11BQ9Y2G3 1177 aa23.64■■□□□ 1.37
VPS29-206ENST00000549578 POLR2DO15514 142 aaKnown RBP23.63■■□□□ 1.37
VPS29-206ENST00000549578 GNAT1P11488 350 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 KLRC1P26715 233 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 STAT6P42226 847 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 NDUFA8P51970 172 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 RTP1P59025 263 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 PTGISQ16647 500 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 FAM126BQ8IXS8 530 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 DHX58Q96C10 678 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 CTAGE1Q96RT6 745 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 SEZ6LQ9BYH1 1024 aa23.63■■□□□ 1.37
VPS29-206ENST00000549578 ARHGEF35A5YM69 484 aa23.62■■□□□ 1.37
VPS29-206ENST00000549578 C22orf31O95567 290 aa23.62■■□□□ 1.37
VPS29-206ENST00000549578 SSBP05455 408 aaKnown RBP eCLIP23.62■■□□□ 1.37
VPS29-206ENST00000549578 TLE2Q04725 743 aa23.62■■□□□ 1.37
VPS29-206ENST00000549578 TBC1D8BQ0IIM8 1120 aa23.62■■□□□ 1.37
VPS29-206ENST00000549578 MTHFD1LQ6UB35 978 aa23.62■■□□□ 1.37
VPS29-206ENST00000549578 KCTD17Q8N5Z5 321 aa23.62■■□□□ 1.37
VPS29-206ENST00000549578 RAD54LQ92698 747 aa23.62■■□□□ 1.37
VPS29-206ENST00000549578 MROH7Q68CQ1 1323 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 FAM237AA0A1B0GTK4 181 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 MBLAC1A4D2B0 266 aaPredicted RBP23.61■■□□□ 1.37
VPS29-206ENST00000549578 PLA2G4BP0C869 781 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 DHX8Q14562 1220 aaKnown RBP23.61■■□□□ 1.37
VPS29-206ENST00000549578 MCM6Q14566 821 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 E2F4Q16254 413 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 ANKRD33Q7Z3H0 272 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 STK17AQ9UEE5 414 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 NOD1Q9Y239 953 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 LOXHD1Q8IVV2 1947 aa23.61■■□□□ 1.37
VPS29-206ENST00000549578 USO1O60763 962 aaKnown RBP23.6■■□□□ 1.37
VPS29-206ENST00000549578 POLGP54098 1239 aaPredicted RBP23.6■■□□□ 1.37
VPS29-206ENST00000549578 PADI6Q6TGC4 694 aa23.6■■□□□ 1.37
VPS29-206ENST00000549578 RUFY4Q6ZNE9 571 aa23.6■■□□□ 1.37
VPS29-206ENST00000549578 IQUBQ8NA54 791 aa23.6■■□□□ 1.37
VPS29-206ENST00000549578 LARP4BQ92615 738 aaKnown RBP23.6■■□□□ 1.37
VPS29-206ENST00000549578 CD4P01730 458 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 CYP2C9P11712 490 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 SYKP43405 635 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 SLC12A3P55017 1021 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 UBE2HP62256 183 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 LRRC71Q8N4P6 559 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 METTL13Q8N6R0 699 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 SYT2Q8N9I0 419 aaPredicted RBP23.59■■□□□ 1.37
VPS29-206ENST00000549578 DHX33Q9H6R0 707 aaKnown RBP23.59■■□□□ 1.37
VPS29-206ENST00000549578 PPME1Q9Y570 386 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 ALPK3Q96L96 1907 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 DCDC2CA8MYV0 355 aa23.59■■□□□ 1.37
VPS29-206ENST00000549578 MAGEB2O15479 319 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms