RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	IGSF9B	Q9UPX0	1349 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	KDM3A	Q9Y4C1	1321 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	ACTN4	O43707	911 aa	Known RBP	10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	ADAMTS4	O75173	837 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	PPFIA4	O75335	1185 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	MYL3	P08590	195 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	C6orf222	P0C671	652 aa	Predicted RBP	10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	HOXD8	P13378	290 aa	Predicted RBP	10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	CCL5	P13501	91 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	STAT6	P42226	847 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	PSMC5	P62195	406 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	DHX8	Q14562	1220 aa	Known RBP	10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	MCM6	Q14566	821 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	FSCN1	Q16658	493 aa	Known RBP	10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	DGKD	Q16760	1214 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	KRBA2	Q6ZNG9	492 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	NEK9	Q8TD19	979 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	AFAP1L1	Q8TED9	768 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	PPP1R13L	Q8WUF5	828 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	RAD54L	Q92698	747 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	GLG1	Q92896	1179 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	MTR	Q99707	1265 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	SH2D3A	Q9BRG2	576 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	C16orf70	Q9BSU1	422 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	ZSWIM4	Q9H7M6	989 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	XPNPEP3	Q9NQH7	507 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	PRDM10	Q9NQV6	1147 aa		10.44	□□□□□ -0.74
DDX55-208	ENST00000541259	EMSY	Q7Z589	1322 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	SLC26A4	O43511	780 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	TRAK2	O60296	914 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	LYPLA2	O95372	231 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	MBD3	O95983	291 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	SLFN14	P0C7P3	912 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	PTMS	P20962	102 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	MARK3	P27448	753 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	CASP1	P29466	404 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	CPT1A	P50416	773 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	NKX3-2	P78367	333 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	PRKCE	Q02156	737 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	PLCB4	Q15147	1175 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	PKN2	Q16513	984 aa	Known RBP	10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	GNAS	Q5JWF2	1037 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	FAM160B1	Q5W0V3	765 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	PLA2G4F	Q68DD2	849 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	CCSAP	Q6IQ19	270 aa	Predicted RBP	10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	ANO5	Q75V66	913 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	PLPPR4	Q7Z2D5	763 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	C4orf19	Q8IY42	314 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	IQUB	Q8NA54	791 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	KLHDC9	Q8NEP7	349 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	KAT2B	Q92831	832 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	ATP6V0A1	Q93050	837 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	ZNF333	Q96JL9	665 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	NACC1	Q96RE7	527 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	NT5C3A	Q9H0P0	336 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	RNF208	Q9H0X6	261 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	RNPEP	Q9H4A4	650 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	SMARCAD1	Q9H4L7	1026 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	AZI2	Q9H6S1	392 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	PAK6	Q9NQU5	681 aa	Predicted RBP	10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	DNM3	Q9UQ16	869 aa		10.43	□□□□□ -0.74
DDX55-208	ENST00000541259	EYA4	O95677	639 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	OAT	P04181	439 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	SSB	P05455	408 aa	Known RBP eCLIP	10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	PLA2G4B	P0C869	781 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	MUT	P22033	750 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	YWHAB	P31946	246 aa	Known RBP	10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	AFM	P43652	599 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	SLC12A3	P55017	1021 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	NPEPPS	P55786	919 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	CHMP4BP1	P59074	171 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	MDM2	Q00987	491 aa	Predicted RBP	10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	LRRC41	Q15345	812 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	KCNA10	Q16322	511 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	CAMK4	Q16566	473 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	SH3RF1	Q7Z6J0	888 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	CKAP2L	Q8IYA6	745 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	CNNM3	Q8NE01	707 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	LARP4B	Q92615	738 aa	Known RBP	10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	ERCC4	Q92889	916 aa	Predicted RBP	10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	ARMC5	Q96C12	935 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	PAGE5	Q96GU1	130 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	TIGD1	Q96MW7	591 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	DEFB118	Q96PH6	123 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	MCOLN1	Q9GZU1	580 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	BHMT2	Q9H2M3	363 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	SPC25	Q9HBM1	224 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	POLD4	Q9HCU8	107 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	TMEM63C	Q9P1W3	806 aa		10.42	□□□□□ -0.74
DDX55-208	ENST00000541259	NPHP3-ACAD11	A0A0J9YXS1	232 aa		10.41	□□□□□ -0.74
DDX55-208	ENST00000541259	MYMK	A6NI61	221 aa		10.41	□□□□□ -0.74
DDX55-208	ENST00000541259		H3BRB1	525 aa		10.41	□□□□□ -0.74
DDX55-208	ENST00000541259	MSC	O60682	206 aa		10.41	□□□□□ -0.74
DDX55-208	ENST00000541259	DKC1	O60832	514 aa	Known RBP eCLIP	10.41	□□□□□ -0.74	5e-33	■■■■■ 32.3
DDX55-208	ENST00000541259	KIN	O60870	393 aa	Known RBP	10.41	□□□□□ -0.74
DDX55-208	ENST00000541259	ASGR1	P07306	291 aa		10.41	□□□□□ -0.74
DDX55-208	ENST00000541259	XRCC6	P12956	609 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
DDX55-208	ENST00000541259	HOXB1	P14653	301 aa	Predicted RBP	10.41	□□□□□ -0.74
DDX55-208	ENST00000541259	RARRES1	P49788	294 aa		10.41	□□□□□ -0.74
DDX55-208	ENST00000541259	PSEN2	P49810	448 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms