RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PAK2Q13177 524 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 TAF3Q5VWG9 929 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 TRIM59Q8IWR1 403 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 CCDC127Q96BQ5 260 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 CDHR1Q96JP9 859 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 NAP1L3Q99457 506 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-213ENST00000540338 A0A0U1RQJ8 604 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 WDR64B1ANS9 1081 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 HIP1RO75146 1068 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 ICAM1P05362 532 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 CETN2P41208 172 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 ARHGAP25P42331 645 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 SLC12A3P55017 1021 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 SLC18A3Q16572 532 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 CFAP58Q5T655 872 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 RSRC2Q7L4I2 434 aaKnown RBP11.75□□□□□ -0.53
CLIP1-213ENST00000540338 ATRIPQ8WXE1 791 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 CEP170P1Q96L14 293 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 MMS19Q96T76 1030 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 HINFPQ9BQA5 517 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 VPS33BQ9H267 617 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 RNF146Q9NTX7 359 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 ARHGAP20Q9P2F6 1191 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 SNX12Q9UMY4 172 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 GOLGA6BA6NDN3 693 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 EIF3DO15371 548 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLIP1-213ENST00000540338 PALMO75781 387 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 UCHL3P15374 230 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 NF2P35240 595 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 KRT76Q01546 638 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 NBPF9Q3BBW0 867 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 WDR44Q5JSH3 913 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 LRRC55Q6ZSA7 311 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 OSBPL9Q96SU4 736 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 RPAP3Q9H6T3 665 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-213ENST00000540338 DNAJC12Q9UKB3 198 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 PIK3CDO00329 1044 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 SLC9A1P19634 815 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 BIRC3Q13489 604 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 CASP8Q14790 479 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 SUPT20HL1Q3ZLR7 823 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 WDR59Q6PJI9 974 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 INTS8Q75QN2 995 aaKnown RBP11.74□□□□□ -0.53
CLIP1-213ENST00000540338 DEFB132Q7Z7B7 95 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 WRNIP1Q96S55 665 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 SIK3Q9Y2K2 1263 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 ZHX2Q9Y6X8 837 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 ACTN1P12814 892 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 KRT5P13647 590 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 MUTP22033 750 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 PEX3P56589 373 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 MTMR2Q13614 643 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 FOXR2Q6PJQ5 311 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 MICALL2Q8IY33 904 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 ANKRD35Q8N283 1001 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 ETNPPLQ8TBG4 499 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 MED4Q9NPJ6 270 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 DUSP10Q9Y6W6 482 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 YDJCA8MPS7 323 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 H0YCG3 227 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 ARP10275 920 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 DMTNQ08495 405 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 IFFO1Q0D2I5 559 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 PTPROQ16827 1216 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 ZC2HC1CQ53FD0 456 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-213ENST00000540338 NFRKBQ6P4R8 1299 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 TRAPPC11Q7Z392 1133 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 IMPG2Q9BZV3 1241 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 KMT5AQ9NQR1 393 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.74□□□□□ -0.532e-9■■■■■ 74.8
CLIP1-213ENST00000540338 KCNH7Q9NS40 1196 aa11.74□□□□□ -0.53
CLIP1-213ENST00000540338 CTNND1O60716 968 aaKnown RBP11.73□□□□□ -0.53
CLIP1-213ENST00000540338 SFNP31947 248 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 OTOP1Q7RTM1 612 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 PPM1KQ8N3J5 372 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 UNC45AQ9H3U1 944 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 CNOT7Q9UIV1 285 aaKnown RBP11.73□□□□□ -0.53
CLIP1-213ENST00000540338 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.73□□□□□ -0.53
CLIP1-213ENST00000540338 RPS12P25398 132 aaKnown RBP11.73□□□□□ -0.53
CLIP1-213ENST00000540338 PSMC5P62195 406 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 VSNL1P62760 191 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 POMGNT1Q8WZA1 660 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 GINM1Q9NU53 330 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 TRAF3IP3Q9Y228 551 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 CSADQ9Y600 493 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 NHSQ6T4R5 1651 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 EML1O00423 815 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 WNT10BO00744 389 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 LRRN2O75325 713 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 TERF2Q15554 542 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 SNRNP48Q6IEG0 339 aaKnown RBP11.73□□□□□ -0.53
CLIP1-213ENST00000540338 UBL4BQ8N7F7 174 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 XXYLT1Q8NBI6 393 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 NOA1Q8NC60 698 aaKnown RBP11.73□□□□□ -0.53
CLIP1-213ENST00000540338 UBE2TQ9NPD8 197 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-213ENST00000540338 RASAL2Q9UJF2 1139 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 LAMB2P55268 1798 aa11.73□□□□□ -0.53
CLIP1-213ENST00000540338 BCORQ6W2J9 1755 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 ZNF185O15231 689 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 NCK2O43639 380 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms