RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 PPP1R12AO14974 1030 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 MYBP10242 640 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 KLK7P49862 253 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 MARSP56192 900 aaKnown RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 MAP3K9P80192 1104 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 VGLL4Q14135 290 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 NAA30Q147X3 362 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 TMEM132BQ14DG7 1078 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 ANKRD23Q86SG2 305 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 TEX13BQ9BXU2 312 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 HOXC10Q9NYD6 342 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 TRAF3IP3Q9Y228 551 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 KLHL33A6NCF5 533 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ZBTB39O15060 712 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 CTIFO43310 598 aaKnown RBP10.62□□□□□ -0.71
CLIP1-212ENST00000540304 P4HBP07237 508 aaKnown RBP10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ZBED6P86452 979 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 C1QTNF12Q5T7M4 302 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ZSWIM4Q9H7M6 989 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 DNAI1Q9UI46 699 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ODF2LQ9ULJ1 636 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 SIK3Q9Y2K2 1263 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 MYH11P35749 1972 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ARHGEF35A5YM69 484 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 SPDYE16A6NNV3 312 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ADM5C9JUS6 153 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 PDXKO00764 312 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 CETN3O15182 167 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 CALUO43852 315 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-212ENST00000540304 PPP1R12BO60237 982 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-212ENST00000540304 GCNT3O95395 438 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 CCND2P30279 289 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ADAM9Q13443 819 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 MYCT1Q8N699 235 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ZNF397Q8NF99 534 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-212ENST00000540304 PURBQ96QR8 312 aaKnown RBP10.62□□□□□ -0.71
CLIP1-212ENST00000540304 SYT17Q9BSW7 474 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 MAF1Q9H063 256 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 BCAS3Q9H6U6 928 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 ACAD9Q9H845 621 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 PARVGQ9HBI0 331 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 AGPAT5Q9NUQ2 364 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 SEL1LQ9UBV2 794 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 CSADQ9Y600 493 aa10.62□□□□□ -0.71
CLIP1-212ENST00000540304 TESPA1A2RU30 521 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 EIF3DO15371 548 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 PRPF6O94906 941 aaKnown RBP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 NR2F2P24468 414 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 HOXD13P35453 343 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 ZNF131P52739 623 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 MEA1Q16626 185 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 TSHZ1Q6ZSZ6 1077 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 TRIM59Q8IWR1 403 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 TYW1Q9NV66 732 aaKnown RBP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 ZNHIT6Q9NWK9 470 aaKnown RBP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 SAMM50Q9Y512 469 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 V9GYY5 206 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 A0A0G2JMZ2 1700 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 FANCGO15287 622 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 UBE4BO95155 1302 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 YBX3P16989 372 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 CASQ1P31415 396 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 QARSP47897 775 aaKnown RBP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 JAK3P52333 1124 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 INHBEP58166 350 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 C9orf131Q5VYM1 1079 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 DLK2Q6UY11 383 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 VSIG10LQ86VR7 867 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 NSUN6Q8TEA1 469 aaKnown RBP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 ANKRD7Q92527 254 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 GPRASP2Q96D09 838 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 CHP1Q99653 195 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 L2HGDHQ9H9P8 463 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 TCEAL9Q9UHQ7 104 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 DBR1Q9UK59 544 aaKnown RBP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 FAM184BQ9ULE4 1060 aa10.61□□□□□ -0.71
CLIP1-212ENST00000540304 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLIP1-212ENST00000540304 KIAA1217Q5T5P2 1943 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 ASTN1O14525 1302 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 SFI1A8K8P3 1242 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 TRIM66O15016 1216 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 LYPLA2O95372 231 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 NR3C2P08235 984 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 SFNP31947 248 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 IREB2P48200 963 aaKnown RBP10.6□□□□□ -0.71
CLIP1-212ENST00000540304 GNG11P61952 73 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 KRT76Q01546 638 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 WDR59Q6PJI9 974 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 STXBP4Q6ZWJ1 553 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 NLRX1Q86UT6 975 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 C10orf67Q8IYJ2 551 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 ACRBPQ8NEB7 543 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 MMRN2Q9H8L6 949 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 LZTFL1Q9NQ48 299 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 CYP39A1Q9NYL5 469 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 JRKLQ9Y4A0 524 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 LCTP09848 1927 aa10.6□□□□□ -0.71
CLIP1-212ENST00000540304 WDR64B1ANS9 1081 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms