RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 USP17L15C9J2P7 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L13C9JLJ4 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L11C9JVI0 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L18D6R9N7 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L22D6RA61 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L17D6RBQ6 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L19D6RCP7 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L20D6RJB6 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 SLC16A3O15427 465 aaKnown RBP10.54□□□□□ -0.72
CDH13-204ENST00000539548 TRAPPC3O43617 180 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 POTEIP0CG38 1075 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 FERP16591 822 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 RPL13P26373 211 aaKnown RBP10.54□□□□□ -0.72
CDH13-204ENST00000539548 STAT3P40763 770 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 SPIRE1Q08AE8 756 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L24Q0WX57 530 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 USP17L6PQ6QN14 398 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 POTEGQ6S5H5 508 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 POTEEQ6S8J3 1075 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 PTF1AQ7RTS3 328 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 AMIGO3Q86WK7 504 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 SFR1Q86XK3 245 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 CNBD1Q8NA66 436 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 OR2W6PQ8NHA6 318 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 ERMNQ8TAM6 284 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 RPGRQ92834 1020 aaKnown RBP10.54□□□□□ -0.72
CDH13-204ENST00000539548 CYFIP2Q96F07 1278 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 ANO3Q9BYT9 981 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 CENPHQ9H3R5 247 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 VCPKMTQ9H867 229 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 PPANQ9NQ55 473 aaKnown RBP10.54□□□□□ -0.72
CDH13-204ENST00000539548 FAM114A2Q9NRY5 505 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 TYW1Q9NV66 732 aaKnown RBP10.54□□□□□ -0.72
CDH13-204ENST00000539548 DNM3Q9UQ16 869 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 STK24Q9Y6E0 443 aa10.54□□□□□ -0.72
CDH13-204ENST00000539548 DDX3XO00571 662 aaKnown RBP eCLIP10.53□□□□□ -0.72
CDH13-204ENST00000539548 TBX3O15119 743 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 DAPK3O43293 454 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 AKAP3O75969 853 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 PAEPP09466 180 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 SPATA31C1P0DKV0 1188 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 ITGA4P13612 1032 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 RPA1P27694 616 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 SHMT1P34896 483 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 FLT3P36888 993 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 MNAT1P51948 309 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 SMTNP53814 917 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 PSMC6P62333 389 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 PPP2R2AP63151 447 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 IFT88Q13099 833 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 PICALMQ13492 652 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 SPDYCQ5MJ68 293 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 RNF187Q5TA31 235 aaPredicted RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 KCTD1Q719H9 257 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 SLC30A5Q8TAD4 765 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 ETNPPLQ8TBG4 499 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 CRYGNQ8WXF5 182 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 SLC35C1Q96A29 364 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 REEP2Q9BRK0 252 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 A1CFQ9NQ94 594 aaKnown RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 AMACRQ9UHK6 382 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 SERPINB13Q9UIV8 391 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 AMFRQ9UKV5 643 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 DIS3Q9Y2L1 958 aaKnown RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 BTAF1O14981 1849 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 NR3C1P04150 777 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 RFC4P35249 363 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 POU5F1Q01860 360 aaKnown RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 AP3B2Q13367 1082 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 Q4G0T1 1027 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 TMC3Q7Z5M5 1100 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 CCDC91Q7Z6B0 441 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 PROCA1Q8NCQ7 364 aaPredicted RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 U2AF1L4Q8WU68 220 aaKnown RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 UBLCP1Q8WVY7 318 aaPredicted RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 UIMC1Q96RL1 719 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 ACTR5Q9H9F9 607 aaPredicted RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 GEMIN8Q9NWZ8 242 aaKnown RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 AJAP1Q9UKB5 411 aaPredicted RBP10.53□□□□□ -0.72
CDH13-204ENST00000539548 TAF1LQ8IZX4 1826 aa10.53□□□□□ -0.72
CDH13-204ENST00000539548 C5orf60A6NFR6 353 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 TTI1O43156 1089 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 BBOX1O75936 387 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 STAT1P42224 750 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 GALCP54803 685 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 SETQ01105 290 aaPredicted RBP10.52□□□□□ -0.72
CDH13-204ENST00000539548 PABPC4Q13310 644 aaKnown RBP eCLIP10.52□□□□□ -0.72
CDH13-204ENST00000539548 PPP2R5EQ16537 467 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 QRICH1Q2TAL8 776 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 CRY2Q49AN0 593 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 TRAPPC3LQ5T215 181 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 DAAM2Q86T65 1068 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 DNAAF5Q86Y56 855 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 TBC1D16Q8TBP0 767 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 BORCS6Q96GS4 357 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 NCAPGQ9BPX3 1015 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 TXLNGYQ9BZA5 131 aa10.52□□□□□ -0.72
CDH13-204ENST00000539548 DDX4Q9NQI0 724 aaKnown RBP10.52□□□□□ -0.72
CDH13-204ENST00000539548 CNOT8Q9UFF9 292 aaKnown RBP10.52□□□□□ -0.72
CDH13-204ENST00000539548 DDX20Q9UHI6 824 aaKnown RBP10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms