RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NFATC3Q12968 1075 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 SMAD2Q15796 467 aaKnown RBP5.76□□□□□ -1.49
CD44-235ENST00000532339 CPZQ66K79 652 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 ARHGEF18Q6ZSZ5 1173 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 KBTBD2Q8IY47 623 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 ZBTB38Q8NAP3 1195 aaPredicted RBP5.76□□□□□ -1.49
CD44-235ENST00000532339 CHST13Q8NET6 341 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 PTPRN2Q92932 1015 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 KRTAP4-5Q9BYR2 181 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 SIRPGQ9P1W8 387 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 TRAF6Q9Y4K3 522 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 DIP2AQ14689 1571 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 PRDM15P57071 1507 aaPredicted RBP5.75□□□□□ -1.49
CD44-235ENST00000532339 CCDC85CA6NKD9 419 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 KCNA6P17658 529 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 NAT1P18440 290 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 PPP2CBP62714 309 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 PPP2CAP67775 309 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 PAK1Q13153 545 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 SKIDA1Q1XH10 827 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 CD276Q5ZPR3 534 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 GGT6Q6P531 493 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 MTDHQ86UE4 582 aaKnown RBP5.75□□□□□ -1.49
CD44-235ENST00000532339 C8orf49Q96NF6 230 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 HIRIP3Q9BW71 556 aaPredicted RBP5.75□□□□□ -1.49
CD44-235ENST00000532339 SSBP3Q9BWW4 388 aaPredicted RBP5.75□□□□□ -1.49
CD44-235ENST00000532339 ARHGAP20Q9P2F6 1191 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 USP35Q9P2H5 1018 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 PFDN2Q9UHV9 154 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 ZDHHC9Q9Y397 364 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 TELO2Q9Y4R8 837 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 ARHGAP23Q9P227 1491 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 UNC13BO14795 1591 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 TIAM1Q13009 1591 aa5.75□□□□□ -1.49
CD44-235ENST00000532339 ATRNO75882 1429 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 MIA2Q96PC5 1412 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 LOC105371045A0A1W2PR82 267 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 NPEPPSL1A6NEC2 478 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 HSPA6P17066 643 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 EPHB4P54760 987 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 PFKPQ01813 784 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 PHF19Q5T6S3 580 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 LIMS2Q7Z4I7 341 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 NLGN4XQ8N0W4 816 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 NUDT10Q8NFP7 164 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 IGDCC4Q8TDY8 1250 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 NUDT11Q96G61 164 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 C1QTNF3Q9BXJ4 246 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 JADE2Q9NQC1 790 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 PPP4R1LQ9P1A2 415 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 ZFP69BQ9UJL9 534 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 ADAM29Q9UKF5 820 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 SETD5Q9C0A6 1442 aa5.74□□□□□ -1.49
CD44-235ENST00000532339 KIDINS220Q9ULH0 1771 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 CTTNBP2Q8WZ74 1663 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 PZPP20742 1482 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 RALGAPBQ86X10 1494 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 ZNF839A8K0R7 811 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 WNT9AO14904 365 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 B4GALT4O60513 344 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 KLHL18O94889 574 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 KNG1P01042 644 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 ZNF20P17024 532 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 GLRBP48167 497 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 PUM1Q14671 1186 aaKnown RBP eCLIP5.73□□□□□ -1.49
CD44-235ENST00000532339 LONRF2Q1L5Z9 754 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 FAM209AQ5JX71 171 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 Q6ZUG5 572 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 ARMC5Q96C12 935 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 CD244Q9BZW8 370 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 KCND1Q9NSA2 647 aa5.73□□□□□ -1.49
CD44-235ENST00000532339 NKTRP30414 1462 aaKnown RBP5.72□□□□□ -1.49
CD44-235ENST00000532339 MYO5CQ9NQX4 1742 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 C1QTNF3-AMACRE9PGA6 284 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 ACOT7O00154 380 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 DIAPH1O60610 1272 aaKnown RBP5.72□□□□□ -1.49
CD44-235ENST00000532339 GTF2F1P35269 517 aaKnown RBP eCLIP5.72□□□□□ -1.49
CD44-235ENST00000532339 GABREP78334 506 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 GUCY1A3Q02108 690 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 GPR19Q15760 415 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 BTBD8Q5XKL5 378 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 SLFN13Q68D06 897 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 ARHGAP36Q6ZRI8 547 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 EP400NLQ6ZTU2 488 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 LRP10Q7Z4F1 713 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 RALYLQ86SE5 291 aaKnown RBP5.72□□□□□ -1.49
CD44-235ENST00000532339 CIR1Q86X95 450 aaPredicted RBP5.72□□□□□ -1.49
CD44-235ENST00000532339 STPG3Q8N7X2 389 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 SH3RF2Q8TEC5 729 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 SREK1Q8WXA9 508 aaKnown RBP5.72□□□□□ -1.49
CD44-235ENST00000532339 DVL3Q92997 716 aaPredicted RBP5.72□□□□□ -1.49
CD44-235ENST00000532339 FBXW5Q969U6 566 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 KRTAP3-1Q9BYR8 98 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 CATSPERZQ9NTU4 200 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 SRPK3Q9UPE1 567 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 PCDHA8Q9Y5H6 950 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 ARHGAP5Q13017 1502 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 CAMTA1Q9Y6Y1 1673 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 PLXNC1O60486 1568 aa5.72□□□□□ -1.49
CD44-235ENST00000532339 TCRBV5S4A2TA0A5A2 114 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms