RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CLP1Q92989 425 aaKnown RBP8.37□□□□□ -1.07
CD44-228ENST00000528455 SPATA32Q96LK8 384 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 PDCD2LQ9BRP1 358 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 GJD2Q9UKL4 321 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 USTQ9Y2C2 406 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 PCDHB6Q9Y5E3 794 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 CLIC4Q9Y696 253 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 PDE4DIPQ5VU43 2346 aa8.37□□□□□ -1.07
CD44-228ENST00000528455 MGAMO43451 1857 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 ELP1O95163 1332 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 ASB14A6NK59 587 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 SPTLC2O15270 562 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 HOXC6P09630 235 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 TGFB3P10600 412 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 TAL1P17542 331 aaPredicted RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 EN2P19622 333 aaPredicted RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 ATP2B1P20020 1258 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 PTMSP20962 102 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 EDNRBP24530 442 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 ADORA2AP29274 412 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 CCND2P30279 289 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 MCM7P33993 719 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 PRPHP41219 470 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 UBXN2AP68543 259 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 CNTN2Q02246 1040 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 GRB14Q14449 540 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 FOXD4L6Q3SYB3 417 aaPredicted RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 CEP55Q53EZ4 464 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 WDR44Q5JSH3 913 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 GNASQ5JWF2 1037 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 WDR78Q5VTH9 848 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 ADALQ6DHV7 355 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 KCNV1Q6PIU1 500 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 MAMDC4Q6UXC1 1216 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 FOXD4L3Q6VB84 417 aaPredicted RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 SLC30A10Q6XR72 485 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 TAS1R3Q7RTX0 852 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 DPP9Q86TI2 863 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 SLFN12Q8IYM2 578 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 TMEM87AQ8NBN3 555 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 LEO1Q8WVC0 666 aaPredicted RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 SCG3Q8WXD2 468 aaKnown RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 USP6NLQ92738 828 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 FERMT2Q96AC1 680 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 FAM20AQ96MK3 541 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 MTMR9Q96QG7 549 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 MXRA8Q9BRK3 442 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 NIFKQ9BYG3 293 aaKnown RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 JADE2Q9NQC1 790 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 DDX25Q9UHL0 483 aaKnown RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 PCDHA12Q9UN75 941 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 SRPRBQ9Y5M8 271 aaKnown RBP8.36□□□□□ -1.07
CD44-228ENST00000528455 UBIAD1Q9Y5Z9 338 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 ZSWIM8A7E2V4 1837 aa8.36□□□□□ -1.07
CD44-228ENST00000528455 RBBP6Q7Z6E9 1792 aaKnown RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 MKI67P46013 3256 aaKnown RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 PLXNA1Q9UIW2 1896 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 IGLV3-22A0A075B6J6 115 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 FAM86B1E9PN63 330 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 COBLO75128 1261 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 PRPF40AO75400 957 aaKnown RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 FAM86B2P0C5J1 330 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 XRCC5P13010 732 aaKnown RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 NCLP19338 710 aaKnown RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 ICAM3P32942 547 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 MCM4P33991 863 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 FLT3LGP49771 235 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 ALDH5A1P51649 535 aaPredicted RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 MRPS9P82933 396 aaKnown RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 ATP2C1P98194 919 aaPredicted RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 CEBPZQ03701 1054 aaKnown RBP8.35□□□□□ -1.07
CD44-228ENST00000528455 STK38Q15208 465 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 OCLNQ16625 522 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 DTHD1Q6ZMT9 781 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 NLRX1Q86UT6 975 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 ZDHHC1Q8WTX9 485 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 SOCS4Q8WXH5 440 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 GPRASP2Q96D09 838 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 CDHR1Q96JP9 859 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 PGBD1Q96JS3 809 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 PRIMPOLQ96LW4 560 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 KCNMB3Q9NPA1 279 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 GABRQQ9UN88 632 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 CNPY2Q9Y2B0 182 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 BRCA2P51587 3418 aa8.35□□□□□ -1.07
CD44-228ENST00000528455 PLXNB2O15031 1838 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 ADCY3O60266 1144 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 NEMFO60524 1076 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 PRMT3O60678 531 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 CUTAO60888 179 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 PGK2P07205 417 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 MYCLP12524 364 aaPredicted RBP8.34□□□□□ -1.07
CD44-228ENST00000528455 EIF2AK2P19525 551 aaKnown RBP8.34□□□□□ -1.07
CD44-228ENST00000528455 IGFBP4P22692 258 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 RGS2P41220 211 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 PHKA2P46019 1235 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 SETQ01105 290 aaPredicted RBP8.34□□□□□ -1.07
CD44-228ENST00000528455 PTSQ03393 145 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 TEAD4Q15561 434 aa8.34□□□□□ -1.07
CD44-228ENST00000528455 CALCRLQ16602 461 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms