RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 CEP290O15078 2479 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 DDX11L8A8MPP1 907 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 PITPNM1O00562 1244 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 TREHO43280 583 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 GRIN1Q05586 938 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 FOXD4L6Q3SYB3 417 aaPredicted RBP23.2■■□□□ 1.3
CD44-222ENST00000526025 MTHFD1LQ6UB35 978 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 FOXD4L3Q6VB84 417 aaPredicted RBP23.2■■□□□ 1.3
CD44-222ENST00000526025 EXOC8Q8IYI6 725 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 CEP89Q96ST8 783 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 CCSER1Q9C0I3 900 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 NT5C3AQ9H0P0 336 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 CSRNP2Q9H175 543 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 TMEM39AQ9NV64 488 aa23.2■■□□□ 1.3
CD44-222ENST00000526025 PP2D1A8MPX8 630 aa23.19■■□□□ 1.3
CD44-222ENST00000526025 C22orf31O95567 290 aa23.19■■□□□ 1.3
CD44-222ENST00000526025 UBA7P41226 1012 aa23.19■■□□□ 1.3
CD44-222ENST00000526025 ZNF200P98182 395 aaPredicted RBP23.19■■□□□ 1.3
CD44-222ENST00000526025 BFSP2Q13515 415 aa23.19■■□□□ 1.3
CD44-222ENST00000526025 JPH2Q9BR39 696 aaPredicted RBP23.19■■□□□ 1.3
CD44-222ENST00000526025 NOC4LQ9BVI4 516 aaKnown RBP23.19■■□□□ 1.3
CD44-222ENST00000526025 CYP26B1Q9NR63 512 aa23.19■■□□□ 1.3
CD44-222ENST00000526025 PRKAG2Q9UGJ0 569 aa23.19■■□□□ 1.3
CD44-222ENST00000526025 TNRC18O15417 2968 aaPredicted RBP23.19■■□□□ 1.3
CD44-222ENST00000526025 SMIM35A0A1B0GVV1 85 aa23.18■■□□□ 1.3
CD44-222ENST00000526025 CUTAO60888 179 aa23.18■■□□□ 1.3
CD44-222ENST00000526025 IGBP1P78318 339 aa23.18■■□□□ 1.3
CD44-222ENST00000526025 TRIM71Q2Q1W2 868 aaKnown RBP23.18■■□□□ 1.3
CD44-222ENST00000526025 POTEGQ6S5H5 508 aa23.18■■□□□ 1.3
CD44-222ENST00000526025 CABP7Q86V35 215 aa23.18■■□□□ 1.3
CD44-222ENST00000526025 LEO1Q8WVC0 666 aaPredicted RBP23.18■■□□□ 1.3
CD44-222ENST00000526025 DHX38Q92620 1227 aaKnown RBP23.18■■□□□ 1.3
CD44-222ENST00000526025 IGKV6-21A0A0C4DH24 114 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 CYP2C9P11712 490 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 KLRC1P26715 233 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 CDC25AP30304 524 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 RFC5P40937 340 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 TBC1D8BQ0IIM8 1120 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 TMEM119Q4V9L6 283 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 RETREG2Q8NC44 543 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 TRAPPC12Q8WVT3 735 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 CALML4Q96GE6 196 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 CEP170P1Q96L14 293 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 SPATA32Q96LK8 384 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 HIPK3Q9H422 1215 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 KIAA1024Q9UPX6 916 aa23.17■■□□□ 1.3
CD44-222ENST00000526025 TRIM43BA6NCK2 446 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 GAS2O43903 313 aaKnown RBP23.16■■□□□ 1.3
CD44-222ENST00000526025 TIMP1P01033 207 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 NCLP19338 710 aaKnown RBP23.16■■□□□ 1.3
CD44-222ENST00000526025 TXLNAP40222 546 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 RARRES1P49788 294 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 ECM1Q16610 540 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 MTERF2Q49AM1 385 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 AXDND1Q5T1B0 1012 aaPredicted RBP23.16■■□□□ 1.3
CD44-222ENST00000526025 SH3RF1Q7Z6J0 888 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 RSPH3Q86UC2 560 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 ZNF710Q8N1W2 664 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 NME8Q8N427 588 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 LINC01465Q8N7H1 131 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 TRIM43Q96BQ3 446 aaPredicted RBP23.16■■□□□ 1.3
CD44-222ENST00000526025 CLIC6Q96NY7 704 aa23.16■■□□□ 1.3
CD44-222ENST00000526025 DHX33Q9H6R0 707 aaKnown RBP23.16■■□□□ 1.3
CD44-222ENST00000526025 PRDM5Q9NQX1 630 aaPredicted RBP23.16■■□□□ 1.3
CD44-222ENST00000526025 TMEM150BA6NC51 233 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 MAFO75444 373 aaPredicted RBP23.15■■□□□ 1.3
CD44-222ENST00000526025 PARNO95453 639 aaKnown RBP23.15■■□□□ 1.3
CD44-222ENST00000526025 NPEPPSP55786 919 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 GRB10Q13322 594 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 XKR9Q5GH70 373 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 PLA2G4FQ68DD2 849 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 TRMT1LQ7Z2T5 733 aaKnown RBP23.15■■□□□ 1.3
CD44-222ENST00000526025 SLC7A3Q8WY07 619 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 SYMPKQ92797 1274 aaKnown RBP23.15■■□□□ 1.3
CD44-222ENST00000526025 CDK5RAP3Q96JB5 506 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 PNMA5Q96PV4 448 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 DDX19AQ9NUU7 478 aaKnown RBP23.15■■□□□ 1.3
CD44-222ENST00000526025 PCDHA7Q9UN72 937 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 DNM3Q9UQ16 869 aa23.15■■□□□ 1.3
CD44-222ENST00000526025 ZBTB39O15060 712 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 DGAT1O75907 488 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 EYA4O95677 639 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 RAG1P15918 1043 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 TMOD1P28289 359 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 ME1P48163 572 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 RUFY4Q6ZNE9 571 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 PIGOQ8TEQ8 1089 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 WNT8BQ93098 351 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 EPSTI1Q96J88 318 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 CCDC43Q96MW1 224 aaKnown RBP23.14■■□□□ 1.29
CD44-222ENST00000526025 CCDC39Q9UFE4 941 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 SIP14410 1827 aa23.14■■□□□ 1.29
CD44-222ENST00000526025 CKBP12277 381 aa23.13■■□□□ 1.29
CD44-222ENST00000526025 SELPP16109 830 aa23.13■■□□□ 1.29
CD44-222ENST00000526025 FAM26DQ5JW98 314 aa23.13■■□□□ 1.29
CD44-222ENST00000526025 KIAA0319LQ8IZA0 1049 aa23.13■■□□□ 1.29
CD44-222ENST00000526025 RFC2P35250 354 aa23.12■■□□□ 1.29
CD44-222ENST00000526025 POLGP54098 1239 aaPredicted RBP23.12■■□□□ 1.29
CD44-222ENST00000526025 ADALQ6DHV7 355 aa23.12■■□□□ 1.29
CD44-222ENST00000526025 MFSD5Q6N075 450 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms