RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 KPNA6O60684 536 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 PTX3P26022 381 aaPredicted RBP5.93□□□□□ -1.46
CD44-217ENST00000525348 ETV4P43268 484 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 RRADP55042 308 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 USP10Q14694 798 aaKnown RBP5.93□□□□□ -1.46
CD44-217ENST00000525348 ERICH6BQ5W0A0 696 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 ARHGEF18Q6ZSZ5 1173 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 UBE2R2Q712K3 238 aaPredicted RBP5.93□□□□□ -1.46
CD44-217ENST00000525348 PRRT2Q7Z6L0 340 aaPredicted RBP5.93□□□□□ -1.46
CD44-217ENST00000525348 LRRTM3Q86VH5 581 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 NIM1KQ8IY84 436 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 KIAA1958Q8N8K9 716 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 ORAI3Q9BRQ5 295 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 KRTAP3-1Q9BYR8 98 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 CABP5Q9NP86 173 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 CDC42EP3Q9UKI2 254 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 SLC4A7Q9Y6M7 1214 aa5.93□□□□□ -1.46
CD44-217ENST00000525348 CUTAO60888 179 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 ATP2A2P16615 1042 aaKnown RBP5.92□□□□□ -1.46
CD44-217ENST00000525348 POU3F2P20265 443 aaPredicted RBP5.92□□□□□ -1.46
CD44-217ENST00000525348 KCNQ1P51787 676 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 ALDH6A1Q02252 535 aaKnown RBP5.92□□□□□ -1.46
CD44-217ENST00000525348 NOLC1Q14978 699 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-217ENST00000525348 PCBP1Q15365 356 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-217ENST00000525348 SURF1Q15526 300 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 TBR1Q16650 682 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 TMEM200BQ69YZ2 307 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 ESRP1Q6NXG1 681 aaKnown RBP5.92□□□□□ -1.46
CD44-217ENST00000525348 CNNM4Q6P4Q7 775 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 CXXC5Q7LFL8 322 aaKnown RBP5.92□□□□□ -1.46
CD44-217ENST00000525348 BCL6BQ8N143 479 aaPredicted RBP5.92□□□□□ -1.46
CD44-217ENST00000525348 NXPE1Q8N323 547 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 FEZ1Q99689 392 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 CARD11Q9BXL7 1154 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 KIAA1683Q9H0B3 1180 aa5.92□□□□□ -1.46
CD44-217ENST00000525348 CNOT11Q9UKZ1 510 aaKnown RBP5.92□□□□□ -1.46
CD44-217ENST00000525348 H7C1D1 291 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 ENPP3O14638 875 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 SLC9A1P19634 815 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 FLT3P36888 993 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 FNTBP49356 437 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 DSG1Q02413 1049 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 MOGSQ13724 837 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 EIF4HQ15056 248 aaKnown RBP5.91□□□□□ -1.46
CD44-217ENST00000525348 SEPT7Q16181 437 aaKnown RBP5.91□□□□□ -1.46
CD44-217ENST00000525348 ZNF827Q17R98 1081 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 RNF151Q2KHN1 245 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 GIMAP6Q6P9H5 292 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 NOP9Q86U38 636 aaKnown RBP5.91□□□□□ -1.46
CD44-217ENST00000525348 C16orf92Q96LL3 132 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 ELF4Q99607 663 aaPredicted RBP5.91□□□□□ -1.46
CD44-217ENST00000525348 FOXB1Q99853 325 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 TARS2Q9BW92 718 aaKnown RBP5.91□□□□□ -1.46
CD44-217ENST00000525348 OXSMQ9NWU1 459 aa5.91□□□□□ -1.46
CD44-217ENST00000525348 A0A0G2JNJ9 132 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 PRLP01236 227 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 HMGCRP04035 888 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 RANGAP1P46060 587 aaPredicted RBP5.9□□□□□ -1.46
CD44-217ENST00000525348 RGS3P49796 1198 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 STAT5BP51692 787 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 NEK4P51957 841 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 ICAM4Q14773 271 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 SPATS1Q496A3 300 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 TRIM68Q6AZZ1 485 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 GLB1LQ6UWU2 654 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 OTOP2Q7RTS6 562 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 LOXL4Q96JB6 756 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 PCIF1Q9H4Z3 704 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 ACSS2Q9NR19 701 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 Q9UFV3 132 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 ST6GALNAC2Q9UJ37 374 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 FBXO10Q9UK96 956 aa5.9□□□□□ -1.46
CD44-217ENST00000525348 NPEPPSL1A6NEC2 478 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 MATN2O00339 956 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 MAFO75444 373 aaPredicted RBP5.89□□□□□ -1.47
CD44-217ENST00000525348 F2P00734 622 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 MAGEA10P43363 369 aaPredicted RBP5.89□□□□□ -1.47
CD44-217ENST00000525348 SLC6A3Q01959 620 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 PCOLCEQ15113 449 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 SLFN13Q68D06 897 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 GRAMD4Q6IC98 578 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 DNERQ8NFT8 737 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 CHTF18Q8WVB6 975 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 MFSD3Q96ES6 412 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 C8orf49Q96NF6 230 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 SAMD11Q96NU1 681 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 GNRHR2Q96P88 292 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 CD248Q9HCU0 757 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 JADE2Q9NQC1 790 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 SMPD4Q9NXE4 827 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 MAGEL2Q9UJ55 1249 aa5.89□□□□□ -1.47
CD44-217ENST00000525348 A0A087X0B3 334 aa5.88□□□□□ -1.47
CD44-217ENST00000525348 GSG1L2A8MUP6 293 aa5.88□□□□□ -1.47
CD44-217ENST00000525348 APEX1P27695 318 aaKnown RBP5.88□□□□□ -1.47
CD44-217ENST00000525348 ADAM17P78536 824 aa5.88□□□□□ -1.47
CD44-217ENST00000525348 MYBPC3Q14896 1274 aa5.88□□□□□ -1.47
CD44-217ENST00000525348 ZNF174Q15697 407 aa5.88□□□□□ -1.47
CD44-217ENST00000525348 PLEKHG4Q58EX7 1191 aa5.88□□□□□ -1.47
CD44-217ENST00000525348 FILIP1Q7Z7B0 1213 aa5.88□□□□□ -1.47
CD44-217ENST00000525348 CIR1Q86X95 450 aaPredicted RBP5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms