RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 VWA3AA6NCI4 1184 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 SFI1A8K8P3 1242 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 BRD1O95696 1058 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 SMIM10L2AP0DMW4 78 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 SMIM10L2BP0DMW5 78 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 GABPB1Q06547 395 aaPredicted RBP8.78□□□□□ -1
LIMCH1-219ENST00000514096 ZRSR2Q15696 482 aaKnown RBP8.78□□□□□ -1
LIMCH1-219ENST00000514096 POTEBQ6S5H4 581 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 DEFB123Q8N688 67 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 BICD2Q8TD16 824 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 ARNTL2Q8WYA1 636 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 RABGGTAQ92696 567 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 TMEM143Q96AN5 459 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 TUBE1Q9UJT0 475 aa8.78□□□□□ -1
LIMCH1-219ENST00000514096 C17orf102A2RUQ5 167 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 MSH4O15457 936 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 CCP110O43303 1012 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 PLA2G6O60733 806 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 USO1O60763 962 aaKnown RBP8.77□□□□□ -1
LIMCH1-219ENST00000514096 GJA9P57773 515 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 FPGSQ05932 587 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 ST3GAL1Q11201 340 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 CALCRLQ16602 461 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 XKR9Q5GH70 373 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 HABP4Q5JVS0 413 aaKnown RBP8.77□□□□□ -1
LIMCH1-219ENST00000514096 TEX35Q5T0J7 233 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 ZNF618Q5T7W0 954 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 KRBA2Q6ZNG9 492 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 NEK8Q86SG6 692 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 DBF4BQ8NFT6 615 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 NLRP7Q8WX94 980 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 KIF2CQ99661 725 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 TTC12Q9H892 705 aaPredicted RBP8.77□□□□□ -1
LIMCH1-219ENST00000514096 ZNF302Q9NR11 478 aa8.77□□□□□ -1
LIMCH1-219ENST00000514096 KIF28PB7ZC32 967 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 CCNE2O96020 404 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 KLRC1P26715 233 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 PBX3P40426 434 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 KCNJ6P48051 423 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 TSGA10IPQ3SY00 556 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 METTL7BQ6UX53 244 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 RHPN2Q8IUC4 686 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 IWS1Q96ST2 819 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 TM6SF1Q9BZW5 370 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 KATNBL1Q9H079 304 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 CRISPLD2Q9H0B8 497 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 POLR3EQ9NVU0 708 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 SPTBN2O15020 2390 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 FSD2A1L4K1 749 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 NOVP48745 357 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 MKRN4PQ13434 485 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 PKP1Q13835 747 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 HIC1Q14526 733 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 UGCGQ16739 394 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 MYRIPQ8NFW9 859 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 LMBR1Q8WVP7 490 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 TBC1D32Q96NH3 1257 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 KDM4CQ9H3R0 1056 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 TMEM165Q9HC07 324 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 PCDHA12Q9UN75 941 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 PCDHB6Q9Y5E3 794 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 TRIOO75962 3097 aa8.77□□□□□ -1.01
LIMCH1-219ENST00000514096 ANKRD65E5RJM6 399 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 CCDC181Q5TID7 509 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 PCNX4Q63HM2 1172 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 CCDC62Q6P9F0 684 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 RUFY4Q6ZNE9 571 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 TTC16Q8NEE8 873 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 WASF1Q92558 559 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 DYDC2Q96IM9 177 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 CEP170P1Q96L14 293 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 TMEM60Q9H2L4 133 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 PRDM12Q9H4Q4 367 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 CWC15Q9P013 229 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 FOCADQ5VW36 1801 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 PPP1R12AO14974 1030 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 PPFIA4O75335 1185 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 FOSP01100 380 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 PEX19P40855 299 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 NLRP11P59045 1033 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 OSTNP61366 133 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 DRP2Q13474 957 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 GRIK4Q16099 956 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 SYT10Q6XYQ8 523 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 TMEM199Q8N511 208 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 MICAL1Q8TDZ2 1067 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 KAT2BQ92831 832 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 GPR20Q99678 358 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 TEKT3Q9BXF9 490 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 ZMYND12Q9H0C1 365 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 UNC45AQ9H3U1 944 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 JADE2Q9NQC1 790 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 MYH7BA7E2Y1 1941 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 ZDBF2Q9HCK1 2354 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 MOXD2PA6NHM9 499 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 M0QZ92 97 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 EML1O00423 815 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 NEMFO60524 1076 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 FGBP02675 491 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 CD52P31358 61 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms