RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 PADI3Q9ULW8 664 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 SAMM50Q9Y512 469 aa16.32■□□□□ 0.2
HMGCS1-203ENST00000507004 RALGAPA2Q2PPJ7 1873 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 RPS6KA5O75582 802 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 CTNNB1P35222 781 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 ANAPC15P60006 121 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 TFF2Q03403 129 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 ANKRD1Q15327 319 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 BANK1Q8NDB2 785 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 P2RX5Q93086 422 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 PPP2R3CQ969Q6 453 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 ZNF689Q96CS4 500 aaPredicted RBP16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 MAP7D2Q96T17 732 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 TEKT3Q9BXF9 490 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 NSUN3Q9H649 340 aaKnown RBP16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 UBE2ZQ9H832 354 aaPredicted RBP16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 RC3H2Q9HBD1 1191 aaKnown RBP16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 PDRG1Q9NUG6 133 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 LRFN2Q9ULH4 789 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 FAM50BQ9Y247 325 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 PRUNE2Q8WUY3 3088 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 CHD7Q9P2D1 2997 aa16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 MYH9P35579 1960 aaKnown RBP16.31■□□□□ 0.2
HMGCS1-203ENST00000507004 GAS7O60861 476 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 CRYBB1P53674 252 aaPredicted RBP16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 CDC42EP1Q00587 391 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 LEXMQ3ZCV2 418 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 Q4G0T1 1027 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 KIAA0319LQ8IZA0 1049 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 BLIDQ8IZY5 108 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 TRAPPC12Q8WVT3 735 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 LENG9Q96B70 501 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 NAP1L4Q99733 375 aaKnown RBP16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 NCOA5Q9HCD5 579 aaKnown RBP16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 DISC1Q9NRI5 854 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 PPP4R2Q9NY27 417 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 GABBR1Q9UBS5 961 aa16.3■□□□□ 0.2
HMGCS1-203ENST00000507004 EYSQ5T1H1 3165 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 STK36Q9NRP7 1315 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 CYP3A7-CYP3A51PA0A087WV96 503 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 C22orf31O95567 290 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 CYP3A7P24462 503 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 SARSP49591 514 aaKnown RBP16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 KCNQ1P51787 676 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 TMEM62Q0P6H9 643 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 NFX1Q12986 1120 aaKnown RBP16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 LRCH2Q5VUJ6 765 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 KRT25Q7Z3Z0 450 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 RASGRP4Q8TDF6 673 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 TBCKQ8TEA7 893 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 WASF1Q92558 559 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 SLC5A5Q92911 643 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 C1QTNF1Q9BXJ1 281 aa16.29■□□□□ 0.2
HMGCS1-203ENST00000507004 MSH4O15457 936 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 DKC1O60832 514 aaKnown RBP eCLIP16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 OATP04181 439 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 ATP4AP20648 1035 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 NONOQ15233 471 aaKnown RBP eCLIP16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 CSPP1Q1MSJ5 1256 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 SLC24A5Q71RS6 500 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 CRIPAKQ8N1N5 446 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 METTL13Q8N6R0 699 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 PABPC5Q96DU9 382 aaKnown RBP16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 UPF3BQ9BZI7 483 aaKnown RBP16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 SLKQ9H2G2 1235 aaPredicted RBP16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 ERVK-5Q9HDB9 667 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 AAASQ9NRG9 546 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 GINS2Q9Y248 185 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 PCDHB7Q9Y5E2 793 aa16.28■□□□□ 0.2
HMGCS1-203ENST00000507004 BRWD1Q9NSI6 2320 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 DENND3A2RUS2 1198 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 ZBTB42B2RXF5 422 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 HOXA2O43364 376 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 GCFC2P16383 781 aaKnown RBP16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 RTN4RL1Q86UN2 441 aaPredicted RBP16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 LINC01599Q8WXQ3 324 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 RSPH1Q8WYR4 309 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 ZBTB10Q96DT7 871 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 MBOAT7Q96N66 472 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 JPH2Q9BR39 696 aaPredicted RBP16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 ELAC1Q9H777 363 aaKnown RBP16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 RGS18Q9NS28 235 aa16.27■□□□□ 0.2
HMGCS1-203ENST00000507004 NLRC5Q86WI3 1866 aa16.27■□□□□ 0.19
HMGCS1-203ENST00000507004 FSD2A1L4K1 749 aa16.26■□□□□ 0.19
HMGCS1-203ENST00000507004 MMP1P03956 469 aa16.26■□□□□ 0.19
HMGCS1-203ENST00000507004 COL19A1Q14993 1142 aa16.26■□□□□ 0.19
HMGCS1-203ENST00000507004 XKR3Q5GH77 459 aa16.26■□□□□ 0.19
HMGCS1-203ENST00000507004 MIER3Q7Z3K6 550 aa16.26■□□□□ 0.19
HMGCS1-203ENST00000507004 EXOC8Q8IYI6 725 aa16.26■□□□□ 0.19
HMGCS1-203ENST00000507004 ST3GAL5Q9UNP4 418 aa16.26■□□□□ 0.19
HMGCS1-203ENST00000507004 NOC2LQ9Y3T9 749 aaKnown RBP16.26■□□□□ 0.19
HMGCS1-203ENST00000507004 CCDC194A0A1B0GVG4 234 aa16.25■□□□□ 0.19
HMGCS1-203ENST00000507004 M0R2N6 131 aa16.25■□□□□ 0.19
HMGCS1-203ENST00000507004 PFKFB2O60825 505 aa16.25■□□□□ 0.19
HMGCS1-203ENST00000507004 PSMD10O75832 226 aa16.25■□□□□ 0.19
HMGCS1-203ENST00000507004 LINC00271P0C7V0 271 aa16.25■□□□□ 0.19
HMGCS1-203ENST00000507004 ZSCAN20P17040 1043 aaPredicted RBP16.25■□□□□ 0.19
HMGCS1-203ENST00000507004 KCNA5P22460 613 aa16.25■□□□□ 0.19
HMGCS1-203ENST00000507004 PRKCEQ02156 737 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms