RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 RPA1P27694 616 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 GRIK4Q16099 956 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 PTGISQ16647 500 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 ZNF484Q5JVG2 852 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 LINC00301Q8NCQ3 95 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 ERMNQ8TAM6 284 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 LMBR1Q8WVP7 490 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 AK8Q96MA6 479 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 CTAGE1Q96RT6 745 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 LXNQ9BS40 222 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 NIFKQ9BYG3 293 aaKnown RBP13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 PDLIM7Q9NR12 457 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 SETD4Q9NVD3 440 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 WRAP73Q9P2S5 460 aaPredicted RBP13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 SRPRBQ9Y5M8 271 aaKnown RBP13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 NR2E3Q9Y5X4 410 aa13.34□□□□□ -0.27
PDLIM5-208ENST00000504489 MBLAC1A4D2B0 266 aaPredicted RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 ZBTB42B2RXF5 422 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 STK25O00506 426 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 KIAA0355O15063 1070 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 PPP6R2O75170 966 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 XRCC6P12956 609 aaKnown RBP eCLIP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 LONP1P36776 959 aaKnown RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 ZNF200P98182 395 aaPredicted RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 CYP4A11Q02928 519 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 DNM1Q05193 864 aaKnown RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 CTTNQ14247 550 aaKnown RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 STK38Q15208 465 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 FOXD4L6Q3SYB3 417 aaPredicted RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 MARCH8Q5T0T0 291 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 HAUS3Q68CZ6 603 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 POTEGQ6S5H5 508 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 FOXD4L3Q6VB84 417 aaPredicted RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 CATSPER3Q86XQ3 398 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 TPH2Q8IWU9 490 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 C7orf61Q8IZ16 206 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 IPO9Q96P70 1041 aaKnown RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 TMEM39AQ9NV64 488 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 FBXO2Q9UK22 296 aaPredicted RBP13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 TBX21Q9UL17 535 aa13.33□□□□□ -0.28
PDLIM5-208ENST00000504489 DDX11L8A8MPP1 907 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 SPTLC2O15270 562 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 TREHO43280 583 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 SLC26A4O43511 780 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 MED24O75448 989 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 MARCKSP29966 332 aaPredicted RBP13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 CCT6AP40227 531 aaKnown RBP13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 PTK7Q13308 1070 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 TARBP2Q15633 366 aaKnown RBP13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 KRT79Q5XKE5 535 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 ANO5Q75V66 913 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 OTUD6AQ7L8S5 288 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 SH3RF1Q7Z6J0 888 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 SERINC5Q86VE9 423 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 KRI1Q8N9T8 703 aaKnown RBP13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 MMTAG2Q9BU76 263 aaKnown RBP13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 ANKEF1Q9NU02 776 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 SEPT9Q9UHD8 586 aaPredicted RBP13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 TUBE1Q9UJT0 475 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 RCOR1Q9UKL0 485 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 NOD1Q9Y239 953 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 PPME1Q9Y570 386 aa13.32□□□□□ -0.28
PDLIM5-208ENST00000504489 MICAL3Q7RTP6 2002 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 TRIM43BA6NCK2 446 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 PP2D1A8MPX8 630 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 MAGEB2O15479 319 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 CYP2C9P11712 490 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 KLRC1P26715 233 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 CDC25AP30304 524 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 YWHABP31946 246 aaKnown RBP13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 IGBP1P78318 339 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 KRT85P78386 507 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 GRIN1Q05586 938 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 RBL2Q08999 1139 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 HYIQ5T013 277 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 MTHFD1LQ6UB35 978 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 TRMT1LQ7Z2T5 733 aaKnown RBP13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 KCTD17Q8N5Z5 321 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 CAGE1Q8TC20 777 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 KCNG4Q8TDN1 519 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 SNX29Q8TEQ0 813 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 TRAPPC12Q8WVT3 735 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 TRIM43Q96BQ3 446 aaPredicted RBP13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 NACC1Q96RE7 527 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 CEP89Q96ST8 783 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 CHMP5Q9NZZ3 219 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 PRKAG2Q9UGJ0 569 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 PCDHA2Q9Y5H9 948 aa13.31□□□□□ -0.28
PDLIM5-208ENST00000504489 SMIM35A0A1B0GVV1 85 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 ZBTB39O15060 712 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 SNPHO15079 494 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 TIMP1P01033 207 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 RPLP2P05387 115 aaKnown RBP13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 UBA7P41226 1012 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 BFSP2Q13515 415 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 ECM1Q16610 540 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 TRIM71Q2Q1W2 868 aaKnown RBP13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 MTERF2Q49AM1 385 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 TAF2Q6P1X5 1199 aa13.3□□□□□ -0.28
PDLIM5-208ENST00000504489 RPAINQ86UA6 219 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms