RNA–Protein interactions for RNA: ENST00000495899.1

MRPL55-233, Transcript of mitochondrial ribosomal protein L55, human

TSL 2

Gene MRPL55, Length 790 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-233	ENST00000495899	GABBR1	Q9UBS5	961 aa		13.94	□□□□□ -0.18
MRPL55-233	ENST00000495899	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.94	□□□□□ -0.18
MRPL55-233	ENST00000495899	SLC4A7	Q9Y6M7	1214 aa		13.94	□□□□□ -0.18
MRPL55-233	ENST00000495899	LAMA3	Q16787	3333 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	FAM205C	A6NFA0	338 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	NBN	O60934	754 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	EFCAB14	O75071	495 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	FOSB	P53539	338 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	IGBP1	P78318	339 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	GUCY1B3	Q02153	619 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	ORC2	Q13416	577 aa	Predicted RBP	13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	CNKSR3	Q6P9H4	555 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	MTHFD1L	Q6UB35	978 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	MIER3	Q7Z3K6	550 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	NOSTRIN	Q8IVI9	506 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	HAS1	Q92839	578 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	GJA10	Q969M2	543 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	CEP131	Q9UPN4	1083 aa		13.93	□□□□□ -0.18
MRPL55-233	ENST00000495899	IGSF9B	Q9UPX0	1349 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	LAMA2	P24043	3122 aa	Known RBP	13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	SMIM35	A0A1B0GVV1	85 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	ABHD14A-ACY1	A0A1B0GW23	586 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	CHMP2A	O43633	222 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	U2AF2	P26368	475 aa	Known RBP eCLIP	13.92	□□□□□ -0.18	2e-8	■□□□□ 10
MRPL55-233	ENST00000495899	KLRC1	P26715	233 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	TRAPPC10	P48553	1259 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	GNL2	Q13823	731 aa	Known RBP	13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	IKBKE	Q14164	716 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	MBTPS1	Q14703	1052 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	IER5	Q5VY09	327 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	RUFY4	Q6ZNE9	571 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	PHOSPHO2	Q8TCD6	241 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	VAV3	Q9UKW4	847 aa		13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.92	□□□□□ -0.18
MRPL55-233	ENST00000495899	DOCK5	Q9H7D0	1870 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	TMEM265	A0A087WTH1	108 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	ZBTB42	B2RXF5	422 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	MAGEB2	O15479	319 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	ZNF862	O60290	1169 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	NEMF	O60524	1076 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	DKC1	O60832	514 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	SLC34A2	O95436	690 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	CHRNA1	P02708	482 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	OAT	P04181	439 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	CALCRL	Q16602	461 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	PLEKHG4	Q58EX7	1191 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	TRAPPC12	Q8WVT3	735 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	DNAJB3	Q8WWF6	145 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	MTMR9	Q96QG7	549 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	PCDHA12	Q9UN75	941 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	SMC3	Q9UQE7	1217 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	SQOR	Q9Y6N5	450 aa		13.91	□□□□□ -0.18
MRPL55-233	ENST00000495899	ZBBX	A8MT70	800 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	ATP2A2	P16615	1042 aa	Known RBP	13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	GJB2	P29033	226 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	PSMC5	P62195	406 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	SPIRE1	Q08AE8	756 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	CUL4A	Q13619	759 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	EPHA7	Q15375	998 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	XKR3	Q5GH77	459 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	ZNF710	Q8N1W2	664 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	USP38	Q8NB14	1042 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	SEPT8	Q92599	483 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	APBB2	Q92870	758 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	SLC9A7	Q96T83	725 aa		13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	NIFK	Q9BYG3	293 aa	Known RBP	13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899	NOL7	Q9UMY1	257 aa	Known RBP	13.9	□□□□□ -0.18
MRPL55-233	ENST00000495899		M0QZ92	97 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	EML1	O00423	815 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	C22orf31	O95567	290 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	P4HB	P07237	508 aa	Known RBP	13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	CTSH	P09668	335 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	QARS	P47897	775 aa	Known RBP	13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	KCNJ6	P48051	423 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	MRPS6	P82932	125 aa	Known RBP	13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	PRKCE	Q02156	737 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	MGAT3	Q09327	533 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	RAB30	Q15771	203 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	UGCG	Q16739	394 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	KIAA0319L	Q8IZA0	1049 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	DEFB123	Q8N688	67 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	DBF4B	Q8NFT6	615 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	ZBTB10	Q96DT7	871 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	FAM49A	Q9H0Q0	323 aa	Predicted RBP	13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	TTC12	Q9H892	705 aa	Predicted RBP	13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	MSRA	Q9UJ68	235 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	KDM3A	Q9Y4C1	1321 aa		13.89	□□□□□ -0.19
MRPL55-233	ENST00000495899	WNT7A	O00755	349 aa		13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	STBD1	O95210	358 aa		13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	ATP2B1	P20020	1258 aa		13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	DNAJB2	P25686	324 aa		13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	TMOD1	P28289	359 aa		13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	MCM7	P33993	719 aa		13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	TXK	P42681	527 aa		13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	WDR5	P61964	334 aa	Known RBP	13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	TARBP2	Q15633	366 aa	Known RBP	13.88	□□□□□ -0.19
MRPL55-233	ENST00000495899	ZNF697	Q5TEC3	545 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms