RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 IGDCC4Q8TDY8 1250 aa15□□□□□ -0.01
HDAC3-213ENST00000492506 TRAPPC12Q8WVT3 735 aa15□□□□□ -0.01
HDAC3-213ENST00000492506 CUL5Q93034 780 aa15□□□□□ -0.01
HDAC3-213ENST00000492506 CELF4Q9BZC1 486 aaKnown RBP15□□□□□ -0.01
HDAC3-213ENST00000492506 GTPBP4Q9BZE4 634 aaKnown RBP15□□□□□ -0.01
HDAC3-213ENST00000492506 S1PR5Q9H228 398 aa15□□□□□ -0.01
HDAC3-213ENST00000492506 PKD2L1Q9P0L9 805 aa15□□□□□ -0.01
HDAC3-213ENST00000492506 FAM186AA6NE01 2351 aa15□□□□□ -0.01
HDAC3-213ENST00000492506 WDR81Q562E7 1941 aa15□□□□□ -0.01
HDAC3-213ENST00000492506 FSCN2O14926 492 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 MGEA5O60502 916 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 PDGFBP01127 241 aaPredicted RBP14.99□□□□□ -0.01
HDAC3-213ENST00000492506 IGHDP01880 384 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 MSNP26038 577 aaKnown RBP14.99□□□□□ -0.01
HDAC3-213ENST00000492506 SMARCA1P28370 1054 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 SARSP49591 514 aaKnown RBP14.99□□□□□ -0.01
HDAC3-213ENST00000492506 MTMR1Q13613 665 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 TMEM266Q2M3C6 531 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 MAP3K14Q99558 947 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 TLR9Q9NR96 1032 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 HCSTQ9UBK5 93 aa14.99□□□□□ -0.01
HDAC3-213ENST00000492506 ERICH2A1L162 156 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 E7EWF7 191 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 FGF18O76093 207 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 PTH1RQ03431 593 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 PLCB4Q15147 1175 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 FAM102BQ5T8I3 360 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 SYCE2Q6PIF2 218 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 CATIPQ7Z7H3 387 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 MICAL1Q8TDZ2 1067 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 RRP36Q96EU6 259 aaKnown RBP14.98□□□□□ -0.01
HDAC3-213ENST00000492506 NEK1Q96PY6 1258 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 CDCA3Q99618 268 aaPredicted RBP14.98□□□□□ -0.01
HDAC3-213ENST00000492506 CDHR5Q9HBB8 845 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 ERVK-5Q9HDB9 667 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 JPH1Q9HDC5 661 aaPredicted RBP14.98□□□□□ -0.01
HDAC3-213ENST00000492506 JADE2Q9NQC1 790 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 PCDHB12Q9Y5F1 795 aa14.98□□□□□ -0.01
HDAC3-213ENST00000492506 MYH9P35579 1960 aaKnown RBP14.98□□□□□ -0.01
HDAC3-213ENST00000492506 SMIM35A0A1B0GVV1 85 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 PROB1E7EW31 1015 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 M0QZ92 97 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 MAFGO15525 162 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 PDIA4P13667 645 aaKnown RBP14.97□□□□□ -0.01
HDAC3-213ENST00000492506 KRT76Q01546 638 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 DMTNQ08495 405 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 PLPPR4Q7Z2D5 763 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 NME8Q8N427 588 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 SRBD1Q8N5C6 995 aaKnown RBP14.97□□□□□ -0.01
HDAC3-213ENST00000492506 NCOA7Q8NI08 942 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 RASGRP4Q8TDF6 673 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 TMEM40Q8WWA1 233 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 ATOH1Q92858 354 aaPredicted RBP14.97□□□□□ -0.01
HDAC3-213ENST00000492506 RIPOR3Q96MK2 946 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 MYL10Q9BUA6 226 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 IRF2BPLQ9H1B7 796 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 CWH43Q9H720 699 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 PSTPIP2Q9H939 334 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 RGS18Q9NS28 235 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 LRFN2Q9ULH4 789 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 PCDHB7Q9Y5E2 793 aa14.97□□□□□ -0.01
HDAC3-213ENST00000492506 U3KPZ7 1027 aaPredicted RBP14.97□□□□□ -0.01
HDAC3-213ENST00000492506 C9IYK1 514 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 H0Y858 1186 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 PLEKHA8P1O95397 391 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 NUBP1P53384 320 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 NFX1Q12986 1120 aaKnown RBP14.96□□□□□ -0.01
HDAC3-213ENST00000492506 SART3Q15020 963 aaKnown RBP14.96□□□□□ -0.01
HDAC3-213ENST00000492506 UBE2SQ16763 222 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 PDE12Q6L8Q7 609 aaKnown RBP14.96□□□□□ -0.01
HDAC3-213ENST00000492506 ANKRD54Q6NXT1 300 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 MTHFD1LQ6UB35 978 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 MB21D2Q8IYB1 491 aaPredicted RBP14.96□□□□□ -0.01
HDAC3-213ENST00000492506 ZNF654Q8IZM8 581 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 COLGALT1Q8NBJ5 622 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 CYP2W1Q8TAV3 490 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 TBC1D32Q96NH3 1257 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 GBP4Q96PP9 640 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 RWDD1Q9H446 243 aaPredicted RBP14.96□□□□□ -0.01
HDAC3-213ENST00000492506 LY9Q9HBG7 655 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 KCNH7Q9NS40 1196 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 TYW1Q9NV66 732 aaKnown RBP14.96□□□□□ -0.01
HDAC3-213ENST00000492506 TMEM260Q9NX78 707 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 SLC9A2Q9UBY0 812 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 TRPC6Q9Y210 931 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 NOC2LQ9Y3T9 749 aaKnown RBP14.96□□□□□ -0.01
HDAC3-213ENST00000492506 ZNF292O60281 2723 aa14.96□□□□□ -0.01
HDAC3-213ENST00000492506 TBKBP1A7MCY6 615 aa14.95□□□□□ -0.02
HDAC3-213ENST00000492506 DDAH1O94760 285 aa14.95□□□□□ -0.02
HDAC3-213ENST00000492506 LETM1O95202 739 aaPredicted RBP14.95□□□□□ -0.02
HDAC3-213ENST00000492506 TECP42680 631 aa14.95□□□□□ -0.02
HDAC3-213ENST00000492506 ACTR2P61160 394 aa14.95□□□□□ -0.02
HDAC3-213ENST00000492506 FAM189BP81408 668 aa14.95□□□□□ -0.02
HDAC3-213ENST00000492506 PLCB3Q01970 1234 aa14.95□□□□□ -0.02
HDAC3-213ENST00000492506 APOBRQ0VD83 1088 aa14.95□□□□□ -0.02
HDAC3-213ENST00000492506 FAM43BQ6ZT52 329 aaPredicted RBP14.95□□□□□ -0.02
HDAC3-213ENST00000492506 ASCL5Q7RTU5 278 aa14.95□□□□□ -0.02
HDAC3-213ENST00000492506 RALYLQ86SE5 291 aaKnown RBP14.95□□□□□ -0.02
HDAC3-213ENST00000492506 CMTR1Q8N1G2 835 aaKnown RBP14.95□□□□□ -0.02
HDAC3-213ENST00000492506 CTCFLQ8NI51 663 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms