RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 FLOT1O75955 427 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 TSPY3P0CV98 308 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 TSPY8P0CW00 308 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 CAVIN4Q5BKX8 364 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 PROM2Q8N271 834 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 ANKRD42Q8N9B4 389 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 SLC5A4Q9NY91 659 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 AMFRQ9UKV5 643 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 TCP11X1B4DZS4 312 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 TDP2O95551 362 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 CCND1P24385 295 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 NUGGCQ68CJ6 796 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 CDCA2Q69YH5 1023 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 GALNT17Q6IS24 598 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 SNX3O60493 162 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 ATP2A2P16615 1042 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 INHBEP58166 350 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 LACTBP83111 547 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 ATP11AP98196 1134 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 MECOMQ03112 1051 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 HERC4Q5GLZ8 1057 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 IRF2BP2Q7Z5L9 587 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 TRIM59Q8IWR1 403 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 GANQ9H2C0 597 aa20.38■□□□□ 0.85
CCDC88B-207ENST00000479965 MPHOSPH10O00566 681 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 PDE6CP51160 858 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 GRM4Q14833 912 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 DAGLBQ8NCG7 672 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 NPHP3-ACAD11A0A0J9YXS1 232 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 SLC37A4O43826 429 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 UCHL3P15374 230 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 GNPTABQ3T906 1256 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 NT5DC3Q86UY8 548 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 SLC44A5Q8NCS7 719 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 ERP44Q9BS26 406 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 EPB41L4BQ9H329 900 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 ERVK-5Q9HDB9 667 aa20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 USP15Q9Y4E8 981 aaPredicted RBP20.37■□□□□ 0.85
CCDC88B-207ENST00000479965 GOLGA6L10A0A0M3HER8 536 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 GNA11P29992 359 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 MSH2P43246 934 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 COPS2P61201 443 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 SLC17A8Q8NDX2 589 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 KCNK9Q9NPC2 374 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 SEPT11Q9NVA2 429 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 MKRN4PQ13434 485 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 GJB7Q6PEY0 223 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 REXO1Q8N1G1 1221 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 GDAP1Q8TB36 358 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 OSBPL1AQ9BXW6 950 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 BMP2KQ9NSY1 1161 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 PRDX5P30044 214 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 ADCY1Q08828 1119 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 SLMAPQ14BN4 828 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 VPS36Q86VN1 386 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 PGM2Q96G03 612 aa20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 SUCLA2Q9P2R7 463 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-207ENST00000479965 SUN1O94901 812 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 KRT18P05783 430 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 ZCWPW2Q504Y3 356 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 C10orf76Q5T2E6 689 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 SPTY2D1Q68D10 685 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 USP17L2Q6R6M4 530 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 SYCE1Q8N0S2 351 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 SEC63Q9UGP8 760 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 HDAC9Q9UKV0 1011 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 ATF3P18847 181 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 NR2F2P24468 414 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 SNX1Q13596 522 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 ECM1Q16610 540 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 AADACL2Q6P093 401 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 ARHGAP27Q6ZUM4 889 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 DGKHQ86XP1 1220 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 RASGEF1CQ8N431 466 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 RBM46Q8TBY0 533 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 NSUN4Q96CB9 384 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 RAB34Q9BZG1 259 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 UBA5Q9GZZ9 404 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 KCNMB3Q9NPA1 279 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 TMOD4Q9NZQ9 345 aa20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 ARPP21Q9UBL0 812 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 RTCBQ9Y3I0 505 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-207ENST00000479965 FOXO6A8MYZ6 492 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 RASGRF2O14827 1237 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 PSMD2Q13200 908 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 NKX1-1Q15270 411 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 EXOC3L4Q17RC7 722 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 C6orf118Q5T5N4 469 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 ZNF444Q8N0Y2 327 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 IFT74Q96LB3 600 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 PPP1R9AQ9ULJ8 1098 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 C1orf167Q5SNV9 1468 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 BCORQ6W2J9 1755 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 CETN3O15182 167 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 PDHA1P08559 390 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 CYP19A1P11511 503 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 JAMLQ86YT9 394 aa20.34■□□□□ 0.85
CCDC88B-207ENST00000479965 BHMG1C9JSJ3 638 aaPredicted RBP20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 GFPT2O94808 682 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 NUDT17P0C025 328 aa20.33■□□□□ 0.85
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