RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	IQCF3	P0C7M6	154 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	SELP	P16109	830 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	KLRC1	P26715	233 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	PSMC5	P62195	406 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	REST	Q13127	1097 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	PPIG	Q13427	754 aa	Known RBP eCLIP	11.53	□□□□□ -0.56	6e-7	■■■□□ 18
HDAC6-222	ENST00000478095	EPHA7	Q15375	998 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	C9orf50	Q5SZB4	431 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	ZNF618	Q5T7W0	954 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	PLA2G4F	Q68DD2	849 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	TRAF7	Q6Q0C0	670 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	BRAP	Q7Z569	592 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	DEFB128	Q7Z7B8	93 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	BBX	Q8WY36	941 aa	Predicted RBP	11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	TNPO1	Q92973	898 aa	Known RBP	11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	FAM167A	Q96KS9	214 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	LXN	Q9BS40	222 aa		11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	FTO	Q9C0B1	505 aa	Known RBP eCLIP	11.53	□□□□□ -0.56
HDAC6-222	ENST00000478095	DDX11L8	A8MPP1	907 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	STBD1	O95210	358 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	C22orf31	O95567	290 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	P4HB	P07237	508 aa	Known RBP	11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	BMP8B	P34820	402 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	QARS	P47897	775 aa	Known RBP	11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	RBL2	Q08999	1139 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	TMEM62	Q0P6H9	643 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	SHH	Q15465	462 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	TMEM266	Q2M3C6	531 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	MTERF2	Q49AM1	385 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	XKR3	Q5GH77	459 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZNF484	Q5JVG2	852 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	TAF2	Q6P1X5	1199 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	MTHFD1L	Q6UB35	978 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	C16orf59	Q7L2K0	433 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	TPH2	Q8IWU9	490 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	DNAJB3	Q8WWF6	145 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	11.52	□□□□□ -0.57	9e-11	■■■■□ 20.5
HDAC6-222	ENST00000478095	NRBP2	Q9NSY0	501 aa		11.52	□□□□□ -0.57
HDAC6-222	ENST00000478095		A0A087WWV3	80 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	RSPH10B2	B2RC85	870 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZBTB39	O15060	712 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	NBN	O60934	754 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	RSPH10B	P0C881	870 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	CLCN3	P51790	818 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	ATP2C1	P98194	919 aa	Predicted RBP	11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	PKP1	Q13835	747 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	MBTPS1	Q14703	1052 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	GPNMB	Q14956	572 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	IL17A	Q16552	155 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZNF365	Q70YC5	407 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	ANO5	Q75V66	913 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	TDH	Q8IZJ6	230 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	LRRC71	Q8N4P6	559 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	METTL13	Q8N6R0	699 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	VWCE	Q96DN2	955 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	PPP1R16B	Q96T49	567 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	IL23A	Q9NPF7	189 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	CEP131	Q9UPN4	1083 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	PCDHA2	Q9Y5H9	948 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	CEP290	O15078	2479 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	COL1A2	P08123	1366 aa		11.51	□□□□□ -0.57
HDAC6-222	ENST00000478095	RANBP2	P49792	3224 aa	Known RBP	11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	PP2D1	A8MPX8	630 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	MED24	O75448	989 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	SLITRK3	O94933	977 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	YWHAB	P31946	246 aa	Known RBP	11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	NPEPPS	P55786	919 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	CEBPZ	Q03701	1054 aa	Known RBP	11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	BECN1	Q14457	450 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	SF3A1	Q15459	793 aa	Known RBP	11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	TARBP2	Q15633	366 aa	Known RBP	11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	TMEM240	Q5SV17	173 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	OTOP2	Q7RTS6	562 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	RSPH3	Q86UC2	560 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	NEK9	Q8TD19	979 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	RNPC3	Q96LT9	517 aa	Known RBP	11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	HSD17B14	Q9BPX1	270 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	OSBPL7	Q9BZF2	842 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZSWIM4	Q9H7M6	989 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	LRWD1	Q9UFC0	647 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	CLIC4	Q9Y696	253 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	LTBP2	Q14767	1821 aa		11.5	□□□□□ -0.57
HDAC6-222	ENST00000478095	SMIM35	A0A1B0GVV1	85 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	VWA3A	A6NCI4	1184 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZBBX	A8MT70	800 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	LAD1	O00515	517 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	DKC1	O60832	514 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	CAND2	O75155	1236 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	FGB	P02675	491 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	CHRNA1	P02708	482 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	VTN	P04004	478 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	SPATA31C1	P0DKV0	1188 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	CDC25A	P30304	524 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	RFC2	P35250	354 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	PRPH	P41219	470 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	MRPS6	P82932	125 aa	Known RBP	11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms