RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 MMP1P03956 469 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 RB1P06400 928 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 GOLGA8HP0CJ92 632 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 EIF2AK2P19525 551 aaKnown RBP6.2□□□□□ -1.42
PTPN4-209ENST00000469511 ICAM3P32942 547 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 PWP2Q15269 919 aaKnown RBP6.2□□□□□ -1.42
PTPN4-209ENST00000469511 PKN1Q16512 942 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 PTPN21Q16825 1174 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 EML3Q32P44 896 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 TSGA10IPQ3SY00 556 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 VPS53Q5VIR6 699 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 DEPDC4Q8N2C3 294 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 EFHBQ8N7U6 833 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 KBTBD3Q8NAB2 608 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 KLHL23Q8NBE8 558 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 DNERQ8NFT8 737 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 IL31RAQ8NI17 732 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 DCAF4Q8WV16 495 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 SUSD6Q92537 303 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 SEPT8Q92599 483 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 CLP1Q92989 425 aaKnown RBP6.2□□□□□ -1.42
PTPN4-209ENST00000469511 ATP6V0A1Q93050 837 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 ZBTB10Q96DT7 871 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 PHF7Q9BWX1 381 aaPredicted RBP6.2□□□□□ -1.42
PTPN4-209ENST00000469511 LMAN2LQ9H0V9 348 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 S1PR5Q9H228 398 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 SETD4Q9NVD3 440 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 RALYQ9UKM9 306 aaKnown RBP6.2□□□□□ -1.42
PTPN4-209ENST00000469511 DOLKQ9UPQ8 538 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 BAHCC1Q9P281 2608 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 EMSYQ7Z589 1322 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 ADGRA3Q8IWK6 1321 aa6.2□□□□□ -1.42
PTPN4-209ENST00000469511 C17orf102A2RUQ5 167 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 TSPY2A6NKD2 308 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 OPLAHO14841 1288 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 SIAH2O43255 324 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 NCK2O43639 380 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 RANBP6O60518 1105 aaKnown RBP6.19□□□□□ -1.42
PTPN4-209ENST00000469511 DGKIO75912 1065 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 ASGR2P07307 311 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 NR3C2P08235 984 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 SMIM10L2AP0DMW4 78 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 SMIM10L2BP0DMW5 78 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 GHRP10912 638 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 PDHBP11177 359 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 HOXD8P13378 290 aaPredicted RBP6.19□□□□□ -1.42
PTPN4-209ENST00000469511 HOXC8P31273 242 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 ERVFC1P60507 584 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 BTG3Q14201 252 aaPredicted RBP6.19□□□□□ -1.42
PTPN4-209ENST00000469511 PAN2Q504Q3 1202 aaKnown RBP6.19□□□□□ -1.42
PTPN4-209ENST00000469511 HSP90AB4PQ58FF6 505 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 ZSCAN25Q6NSZ9 544 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 KANK3Q6NY19 840 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 SYCE2Q6PIF2 218 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 RUFY4Q6ZNE9 571 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 TRIM50Q86XT4 487 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 FTSJ3Q8IY81 847 aaKnown RBP6.19□□□□□ -1.42
PTPN4-209ENST00000469511 CRIPAKQ8N1N5 446 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 ATP8B4Q8TF62 1192 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 POF1BQ8WVV4 589 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 C11orf84Q9BUA3 381 aaPredicted RBP6.19□□□□□ -1.42
PTPN4-209ENST00000469511 AGO3Q9H9G7 860 aaKnown RBP6.19□□□□□ -1.42
PTPN4-209ENST00000469511 MRVI1Q9Y6F6 885 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 GPR179Q6PRD1 2367 aa6.19□□□□□ -1.42
PTPN4-209ENST00000469511 C2orf16Q68DN1 1984 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 DMXL1Q9Y485 3027 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 PPFIA4O75335 1185 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 GGPS1O95749 300 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 LGALS2P05162 132 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 WEE2P0C1S8 567 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 MYCLP12524 364 aaPredicted RBP6.18□□□□□ -1.42
PTPN4-209ENST00000469511 ADAM17P78536 824 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 ZNF543Q08ER8 600 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 MGAT3Q09327 533 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 APOBRQ0VD83 1088 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 LAMC2Q13753 1193 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 KCNC3Q14003 757 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 LPIN1Q14693 890 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 STXBP2Q15833 593 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 FAM26DQ5JW98 314 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 CWF19L1Q69YN2 538 aaKnown RBP6.18□□□□□ -1.42
PTPN4-209ENST00000469511 VASH1Q7L8A9 365 aaPredicted RBP6.18□□□□□ -1.42
PTPN4-209ENST00000469511 KIAA2013Q8IYS2 634 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 DCLK2Q8N568 766 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 KREMEN2Q8NCW0 462 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 PPTC7Q8NI37 304 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 NKD2Q969F2 451 aaPredicted RBP6.18□□□□□ -1.42
PTPN4-209ENST00000469511 SPATA33Q96N06 139 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 RMDN3Q96TC7 470 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 NAPBQ9H115 298 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 EHMT1Q9H9B1 1298 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 DOCK6Q96HP0 2047 aa6.18□□□□□ -1.42
PTPN4-209ENST00000469511 CHD8Q9HCK8 2581 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 C2CD4DB7Z1M9 353 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 H3BRB1 525 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 RAB11FIP3O75154 756 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 SNHG28P0DPA3 235 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 TOP1P11387 765 aaKnown RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 NPR3P17342 541 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 IBSPP21815 317 aaPredicted RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms