RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SLC9A2Q9UBY0 812 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 NFASCO94856 1347 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 MBLAC1A4D2B0 266 aaPredicted RBP19.99■□□□□ 0.79
COL7A1-205ENST00000465238 IPO5O00410 1097 aaKnown RBP19.99■□□□□ 0.79
COL7A1-205ENST00000465238 CCNT1O60563 726 aaKnown RBP19.99■□□□□ 0.79
COL7A1-205ENST00000465238 UPP2O95045 317 aa19.99■□□□□ 0.79
COL7A1-205ENST00000465238 TDP2O95551 362 aa19.99■□□□□ 0.79
COL7A1-205ENST00000465238 GCFC2P16383 781 aaKnown RBP19.99■□□□□ 0.79
COL7A1-205ENST00000465238 Q4G0T1 1027 aa19.99■□□□□ 0.79
COL7A1-205ENST00000465238 MCTP1Q6DN14 999 aa19.99■□□□□ 0.79
COL7A1-205ENST00000465238 PPP4R3AQ6IN85 833 aa19.99■□□□□ 0.79
COL7A1-205ENST00000465238 RUFY4Q6ZNE9 571 aa19.99■□□□□ 0.79
COL7A1-205ENST00000465238 TNPO1Q92973 898 aaKnown RBP19.99■□□□□ 0.79
COL7A1-205ENST00000465238 NECAB3Q96P71 396 aaPredicted RBP19.99■□□□□ 0.79
COL7A1-205ENST00000465238 TBC1D22BQ9NU19 505 aa19.99■□□□□ 0.79
COL7A1-205ENST00000465238 DDX25Q9UHL0 483 aaKnown RBP19.99■□□□□ 0.79
COL7A1-205ENST00000465238 RRN3P2A6NIE6 340 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 GHRP10912 638 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 MGAT3Q09327 533 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 ITGB3BPQ13352 177 aaPredicted RBP19.98■□□□□ 0.79
COL7A1-205ENST00000465238 EPC2Q52LR7 807 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 MARCH8Q5T0T0 291 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 NOSTRINQ8IVI9 506 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 UIMC1Q96RL1 719 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 AZI2Q9H6S1 392 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 TCEAL9Q9UHQ7 104 aa19.98■□□□□ 0.79
COL7A1-205ENST00000465238 NLRC5Q86WI3 1866 aa19.97■□□□□ 0.79
COL7A1-205ENST00000465238 MSH4O15457 936 aa19.97■□□□□ 0.79
COL7A1-205ENST00000465238 U2AF2P26368 475 aaKnown RBP eCLIP19.97■□□□□ 0.79
COL7A1-205ENST00000465238 DNAJB3Q8WWF6 145 aa19.97■□□□□ 0.79
COL7A1-205ENST00000465238 LENG9Q96B70 501 aa19.97■□□□□ 0.79
COL7A1-205ENST00000465238 MBOAT7Q96N66 472 aa19.97■□□□□ 0.79
COL7A1-205ENST00000465238 PCYT2Q99447 389 aa19.97■□□□□ 0.79
COL7A1-205ENST00000465238 RALGAPA2Q2PPJ7 1873 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 DDX39AO00148 427 aaKnown RBP19.96■□□□□ 0.79
COL7A1-205ENST00000465238 MARCH6O60337 910 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 INSRRP14616 1297 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 ATP2B1P20020 1258 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 ACTR2P61160 394 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 IGBP1P78318 339 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 LPIN1Q14693 890 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 PTPROQ16827 1216 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 PLPPR4Q7Z2D5 763 aa19.96■□□□□ 0.79
COL7A1-205ENST00000465238 MRPL38Q96DV4 380 aaKnown RBP19.96■□□□□ 0.79
COL7A1-205ENST00000465238 NOL7Q9UMY1 257 aaKnown RBP19.96■□□□□ 0.79
COL7A1-205ENST00000465238 H3BNC9 293 aa19.95■□□□□ 0.78
COL7A1-205ENST00000465238 DHX15O43143 795 aaKnown RBP19.95■□□□□ 0.78
COL7A1-205ENST00000465238 MRPS6P82932 125 aaKnown RBP19.95■□□□□ 0.78
COL7A1-205ENST00000465238 FBXO47Q5MNV8 452 aa19.95■□□□□ 0.78
COL7A1-205ENST00000465238 TSHZ1Q6ZSZ6 1077 aa19.95■□□□□ 0.78
COL7A1-205ENST00000465238 TMEM192Q8IY95 271 aa19.95■□□□□ 0.78
COL7A1-205ENST00000465238 SLC5A5Q92911 643 aa19.95■□□□□ 0.78
COL7A1-205ENST00000465238 RIT2Q99578 217 aa19.95■□□□□ 0.78
COL7A1-205ENST00000465238 UBE2ZQ9H832 354 aaPredicted RBP19.95■□□□□ 0.78
COL7A1-205ENST00000465238 TRPC6Q9Y210 931 aa19.95■□□□□ 0.78
COL7A1-205ENST00000465238 CDY2AQ9Y6F7 541 aa19.95■□□□□ 0.78
COL7A1-205ENST00000465238 TTC3P53804 2025 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.94■□□□□ 0.78
COL7A1-205ENST00000465238 VPS37CA5D8V6 355 aaPredicted RBP19.94■□□□□ 0.78
COL7A1-205ENST00000465238 SLC37A4O43826 429 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 GAS7O60861 476 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 BAG4O95429 457 aaKnown RBP19.94■□□□□ 0.78
COL7A1-205ENST00000465238 SLC26A2P50443 739 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 STAT5BP51692 787 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 KRT76Q01546 638 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 GPM6BQ13491 265 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 BECN1Q14457 450 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 LRCH2Q5VUJ6 765 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 IER5Q5VY09 327 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 FIBCD1Q8N539 461 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 TEKT3Q9BXF9 490 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 SQORQ9Y6N5 450 aa19.94■□□□□ 0.78
COL7A1-205ENST00000465238 ENPP3O14638 875 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 ATG7O95352 703 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 SYT1P21579 422 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 TRAPPC10P48553 1259 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 PLCB4Q15147 1175 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 TIGD5Q53EQ6 642 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 ZNF746Q6NUN9 644 aaPredicted RBP19.93■□□□□ 0.78
COL7A1-205ENST00000465238 SPRYD3Q8NCJ5 442 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 ETNPPLQ8TBG4 499 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 FAM20AQ96MK3 541 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 FAM49AQ9H0Q0 323 aaPredicted RBP19.93■□□□□ 0.78
COL7A1-205ENST00000465238 PCDHA2Q9Y5H9 948 aa19.93■□□□□ 0.78
COL7A1-205ENST00000465238 M0QZ92 97 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 TBX3O15119 743 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 CCNE2O96020 404 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 TTC38Q5R3I4 469 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 MIS18BP1Q6P0N0 1132 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 POTEDQ86YR6 584 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 SLFN12Q8IYM2 578 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 GJA10Q969M2 543 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 C1QTNF1Q9BXJ1 281 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 RWDD3Q9Y3V2 267 aa19.92■□□□□ 0.78
COL7A1-205ENST00000465238 POTEB3A0JP26 581 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 NEMFO60524 1076 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 RB1P06400 928 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 COL9A1P20849 921 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 MCM7P33993 719 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 ORC2Q13416 577 aaPredicted RBP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms