RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 COL20A1Q9P218 1284 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 MYO1AQ9UBC5 1043 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 DDX41Q9UJV9 622 aaKnown RBP10.98□□□□□ -0.65
PTPRD-207ENST00000463477 Q9Y3F1 56 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 RBM47A0AV96 593 aaKnown RBP10.98□□□□□ -0.65
PTPRD-207ENST00000463477 GCOM1H8Y6P7 765 aaPredicted RBP10.98□□□□□ -0.65
PTPRD-207ENST00000463477 FANCGO15287 622 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 TADA3O75528 432 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 POLR2MP0CAP2 368 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 DNM2P50570 870 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 FXR1P51114 621 aaKnown RBP eCLIP10.98□□□□□ -0.65
PTPRD-207ENST00000463477 TNFAIP2Q03169 654 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 NAA30Q147X3 362 aaPredicted RBP10.98□□□□□ -0.65
PTPRD-207ENST00000463477 LRRC41Q15345 812 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 ELF2Q15723 593 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 CALCRLQ16602 461 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 GJC2Q5T442 439 aaPredicted RBP10.98□□□□□ -0.65
PTPRD-207ENST00000463477 MCTP2Q6DN12 878 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 CYP26C1Q6V0L0 522 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 RAD9BQ6WBX8 426 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 EEPD1Q7L9B9 569 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 RNF180Q86T96 592 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 SMAP1Q8IYB5 467 aaPredicted RBP10.98□□□□□ -0.65
PTPRD-207ENST00000463477 RETREG2Q8NC44 543 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 LRRC15Q8TF66 581 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 PDGFCQ9NRA1 345 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 ABHD10Q9NUJ1 306 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 EXOC1Q9NV70 894 aa10.98□□□□□ -0.65
PTPRD-207ENST00000463477 GNEQ9Y223 722 aaKnown RBP10.98□□□□□ -0.65
PTPRD-207ENST00000463477 SOWAHDA6NJG2 315 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 PIK3CDO00329 1044 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 ADCY6O43306 1168 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 EDIL3O43854 480 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 ADAMTS4O75173 837 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 CCT6AP40227 531 aaKnown RBP10.97□□□□□ -0.65
PTPRD-207ENST00000463477 ADCYAP1R1P41586 468 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 GJA9P57773 515 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 GNG11P61952 73 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 TUBB4BP68371 445 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 PDE4DQ08499 809 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 ARHGEF16Q5VV41 709 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 ZNF662Q6ZS27 426 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 TEX2Q8IWB9 1127 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 KLHDC9Q8NEP7 349 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 P2RX5Q93086 422 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 DUSP9Q99956 384 aaKnown RBP10.97□□□□□ -0.65
PTPRD-207ENST00000463477 TSEN34Q9BSV6 310 aaKnown RBP10.97□□□□□ -0.65
PTPRD-207ENST00000463477 NUP58Q9BVL2 599 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 FAM53CQ9NYF3 392 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 TAB2Q9NYJ8 693 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 MAGEC2Q9UBF1 373 aaPredicted RBP10.97□□□□□ -0.65
PTPRD-207ENST00000463477 MRFAP1Q9Y605 127 aa10.97□□□□□ -0.65
PTPRD-207ENST00000463477 MCM3APO60318 1980 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 KBTBD13C9JR72 458 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 MEIS2O14770 477 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 URI1O94763 535 aaPredicted RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 PGK1P00558 417 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 NR3C2P08235 984 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 CST5P28325 142 aaPredicted RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 HOXA13P31271 388 aaPredicted RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 TECP42680 631 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 PSMD2Q13200 908 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 GRB10Q13322 594 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 STXBP2Q15833 593 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 DUSP28Q4G0W2 176 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 TMEM119Q4V9L6 283 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 FIGNQ5HY92 759 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 HYIQ5T013 277 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 JAKMIP3Q5VZ66 844 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 CCSAPQ6IQ19 270 aaPredicted RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 UNC13DQ70J99 1090 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 SV2BQ7L1I2 683 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 FBXO16Q8IX29 292 aaPredicted RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 MNS1Q8NEH6 495 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 DPF3Q92784 378 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 CUL5Q93034 780 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 WDR24Q96S15 920 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 DNAJC7Q99615 494 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 SENP6Q9GZR1 1112 aaPredicted RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 UPF3AQ9H1J1 476 aaKnown RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 VPS16Q9H269 839 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 MRPL44Q9H9J2 332 aaKnown RBP10.96□□□□□ -0.65
PTPRD-207ENST00000463477 SPC25Q9HBM1 224 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 PXMP2Q9NR77 195 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 BLOC1S4Q9NUP1 217 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 LRWD1Q9UFC0 647 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 CAPN11Q9UMQ6 739 aa10.96□□□□□ -0.65
PTPRD-207ENST00000463477 CEP290O15078 2479 aa10.96□□□□□ -0.66
PTPRD-207ENST00000463477 EIF3JO75822 258 aaKnown RBP10.95□□□□□ -0.66
PTPRD-207ENST00000463477 SMPD1P17405 629 aa10.95□□□□□ -0.66
PTPRD-207ENST00000463477 PMS1P54277 932 aaKnown RBP10.95□□□□□ -0.66
PTPRD-207ENST00000463477 ASIC1P78348 528 aa10.95□□□□□ -0.66
PTPRD-207ENST00000463477 UBXN1Q04323 297 aa10.95□□□□□ -0.66
PTPRD-207ENST00000463477 MTF1Q14872 753 aa10.95□□□□□ -0.66
PTPRD-207ENST00000463477 ERCC6LQ2NKX8 1250 aa10.95□□□□□ -0.66
PTPRD-207ENST00000463477 CENPPQ6IPU0 288 aa10.95□□□□□ -0.66
PTPRD-207ENST00000463477 FBXO38Q6PIJ6 1188 aa10.95□□□□□ -0.66
PTPRD-207ENST00000463477 MOXD1Q6UVY6 613 aa10.95□□□□□ -0.66
PTPRD-207ENST00000463477 VSIG10LQ86VR7 867 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms