RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ABT1Q9ULW3 272 aaKnown RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 VGLL3A8MV65 326 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 POLRMTO00411 1230 aaKnown RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 CLDN3O15551 220 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 ATP5DP30049 168 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 SFNP31947 248 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 MXRA7P84157 204 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 DDR1Q08345 913 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 MTMR3Q13615 1198 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 LPAR1Q92633 364 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 SAAL1Q96ER3 474 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 RPS6KC1Q96S38 1066 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 PPANQ9NQ55 473 aaKnown RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 STIM2Q9P246 746 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 DDTLA6NHG4 134 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 SMIM22K7EJ46 135 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 STK10O94804 968 aaKnown RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 MICALL1Q8N3F8 863 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 FAM149B1Q96BN6 582 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 AGBL1Q96MI9 1066 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 CEP72Q9P209 647 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 PCDHA10Q9Y5I2 948 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 HEXIM1O94992 359 aaKnown RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 EYA4O95677 639 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 MYCP01106 439 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 TOB1P50616 345 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 HDLBPQ00341 1268 aaKnown RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 ZNF280CQ8ND82 737 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 ZDHHC15Q96MV8 337 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 TEX13BQ9BXU2 312 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 EPB41L5Q9HCM4 733 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 SHPRHQ149N8 1683 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 HIP1RO75146 1068 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 FDX1P10109 184 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 GFPT1Q06210 699 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-205ENST00000439160 DMTNQ08495 405 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 CEP128Q6ZU80 1094 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 C2orf69Q8N8R5 385 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 ZNF302Q9NR11 478 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 ADGRG1Q9Y653 693 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 EXOC8Q8IYI6 725 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 SLC16A10Q8TF71 515 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 PGRMC1O00264 195 aaKnown RBP13.31□□□□□ -0.28
TCOF1-205ENST00000439160 SRGAP2O75044 1071 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 MAPK6Q16659 721 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 SPOUT1Q5T280 376 aaKnown RBP13.31□□□□□ -0.28
TCOF1-205ENST00000439160 RASGRP2Q7LDG7 609 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 PDE11AQ9HCR9 933 aa13.31□□□□□ -0.28
TCOF1-205ENST00000439160 ABL1P00519 1130 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 IL1R1P14778 569 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 BFSP1Q12934 665 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 NFX1Q12986 1120 aaKnown RBP13.3□□□□□ -0.28
TCOF1-205ENST00000439160 NEDD9Q14511 834 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 SLFN12LQ6IEE8 588 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 HAUS6Q7Z4H7 955 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 PARD6BQ9BYG5 372 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 SEL1LQ9UBV2 794 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 C3P01024 1663 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 RHOBTB3O94955 611 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 ATP1A2P50993 1020 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 CTAGE3PQ8IX95 158 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 PLCD3Q8N3E9 789 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 SSX2IPQ9Y2D8 614 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 PABPN1LA6NDY0 278 aaKnown RBP13.3□□□□□ -0.28
TCOF1-205ENST00000439160 SNX1Q13596 522 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 RPF1Q9H9Y2 349 aaKnown RBP13.3□□□□□ -0.28
TCOF1-205ENST00000439160 RGS16O15492 202 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-205ENST00000439160 SLC37A4O43826 429 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 SMARCA1P28370 1054 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 ABCD1P33897 745 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 PSPC1Q8WXF1 523 aaKnown RBP13.3□□□□□ -0.28
TCOF1-205ENST00000439160 REEP2Q9BRK0 252 aa13.3□□□□□ -0.28
TCOF1-205ENST00000439160 NR3C2P08235 984 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 MGARPQ8TDB4 240 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 C7orf25Q9BPX7 421 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 IRX2Q9BZI1 471 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-205ENST00000439160 MIS12Q9H081 205 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 KCNF1Q9H3M0 494 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 ESYT2A0FGR8 921 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 STAMBPO95630 424 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 SLC7A5Q01650 507 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 CATSPER4Q7RTX7 472 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 CCDC117Q8IWD4 279 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-205ENST00000439160 AGBL3Q8NEM8 1001 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 AP1M1Q9BXS5 423 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 NBPF3Q9H094 633 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.29□□□□□ -0.28
TCOF1-205ENST00000439160 XPOTO43592 962 aaKnown RBP13.29□□□□□ -0.28
TCOF1-205ENST00000439160 YWHABP31946 246 aaKnown RBP13.29□□□□□ -0.28
TCOF1-205ENST00000439160 VAMP7P51809 220 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 COL9A3Q14050 684 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-205ENST00000439160 KCTD16Q68DU8 428 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 TRIM50Q86XT4 487 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 GIMAP7Q8NHV1 300 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 ATG4CQ96DT6 458 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 RASSF4Q9H2L5 321 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 JPH1Q9HDC5 661 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-205ENST00000439160 IL17RBQ9NRM6 502 aa13.29□□□□□ -0.28
TCOF1-205ENST00000439160 SLC9A2Q9UBY0 812 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms