RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 TMC4Q7Z404 712 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 TMC3Q7Z5M5 1100 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 TXNRD3Q86VQ6 643 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 HES6Q96HZ4 224 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 PSMD1Q99460 953 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 MKNK1Q9BUB5 465 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 CARD9Q9H257 536 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 PSTPIP2Q9H939 334 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 JMJD4Q9H9V9 463 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 KLC4Q9NSK0 619 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 PARP2Q9UGN5 583 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 KIAA1024Q9UPX6 916 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 FOCADQ5VW36 1801 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 KAT6BQ8WYB5 2073 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 MYH10P35580 1976 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 ZSCAN5CA6NGD5 496 aaPredicted RBP12□□□□□ -0.49
LIMS1-207ENST00000422797 EIF3DO15371 548 aaKnown RBP eCLIP12□□□□□ -0.49
LIMS1-207ENST00000422797 EDIL3O43854 480 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 PPFIA2O75334 1257 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 RASSF9O75901 435 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 GGPS1O95749 300 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 GSTA1P08263 222 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 NUDT17P0C025 328 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 ZBTB48P10074 688 aaPredicted RBP12□□□□□ -0.49
LIMS1-207ENST00000422797 PON1P27169 355 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 SLC12A3P55017 1021 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 RHBDL3P58872 404 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 MRPS25P82663 173 aaKnown RBP12□□□□□ -0.49
LIMS1-207ENST00000422797 GABPAQ06546 454 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 BYSLQ13895 437 aaKnown RBP12□□□□□ -0.49
LIMS1-207ENST00000422797 EPHA7Q15375 998 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 NELFCDQ8IXH7 590 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 CCDC13Q8IYE1 715 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 METTL13Q8N6R0 699 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 RFFLQ8WZ73 363 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 COA7Q96BR5 231 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 CCDC114Q96M63 670 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 FAM20AQ96MK3 541 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 NUDT12Q9BQG2 462 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 PACSIN1Q9BY11 444 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 UBA5Q9GZZ9 404 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 KDM4CQ9H3R0 1056 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 DNM3Q9UQ16 869 aa12□□□□□ -0.49
LIMS1-207ENST00000422797 CCDC169A6NNP5 214 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 MIF4GDA9UHW6 222 aaKnown RBP11.99□□□□□ -0.49
LIMS1-207ENST00000422797 F8VZ95 297 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 MYO1FO00160 1098 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 FOSP01100 380 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-207ENST00000422797 RPA1P27694 616 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 SLC8A1P32418 973 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 HPDP32754 393 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-207ENST00000422797 PTENP60484 403 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 ARID5AQ03989 594 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 IFT88Q13099 833 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 TCEAL1Q15170 157 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 UAP1Q16222 522 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-207ENST00000422797 SLC15A2Q16348 729 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 DPY19L2P1Q6NXN4 242 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 STXBP4Q6ZWJ1 553 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 NT5DC3Q86UY8 548 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 ADGRF4Q8IZF3 695 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 ANKS4BQ8N8V4 417 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 SYT2Q8N9I0 419 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-207ENST00000422797 MORC4Q8TE76 937 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 UBLCP1Q8WVY7 318 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-207ENST00000422797 TATDN2Q93075 761 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 TLCD1Q96CP7 247 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 PGM2Q96G03 612 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 CCDC17Q96LX7 622 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 HINFPQ9BQA5 517 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 CPVLQ9H3G5 476 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 CD209Q9NNX6 404 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 PFASO15067 1338 aa11.99□□□□□ -0.49
LIMS1-207ENST00000422797 E9PMD0 336 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 TBCAO75347 108 aaKnown RBP11.98□□□□□ -0.49
LIMS1-207ENST00000422797 DNAJC8O75937 253 aaPredicted RBP11.98□□□□□ -0.49
LIMS1-207ENST00000422797 DNA2P51530 1060 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 HADHBP55084 474 aaKnown RBP11.98□□□□□ -0.49
LIMS1-207ENST00000422797 NEDD9Q14511 834 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 SNCBQ16143 134 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 ECM1Q16610 540 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 KRT71Q3SY84 523 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 Q4G0T1 1027 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 BTNL9Q6UXG8 535 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 GLIS3Q8NEA6 775 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 DCAF4Q8WV16 495 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 CTNNBL1Q8WYA6 563 aaPredicted RBP11.98□□□□□ -0.49
LIMS1-207ENST00000422797 SEC16BQ96JE7 1060 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 FMO2Q99518 471 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 TMEM109Q9BVC6 243 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 NSRP1Q9H0G5 558 aaKnown RBP11.98□□□□□ -0.49
LIMS1-207ENST00000422797 PPANQ9NQ55 473 aaKnown RBP11.98□□□□□ -0.49
LIMS1-207ENST00000422797 OLFML3Q9NRN5 406 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 SEL1LQ9UBV2 794 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 DDX20Q9UHI6 824 aaKnown RBP11.98□□□□□ -0.49
LIMS1-207ENST00000422797 GGA1Q9UJY5 639 aa11.98□□□□□ -0.49
LIMS1-207ENST00000422797 FRMPD2Q68DX3 1309 aaPredicted RBP11.98□□□□□ -0.49
LIMS1-207ENST00000422797 POTEB3A0JP26 581 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 POTECB2RU33 542 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 ASAP2O43150 1006 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms