RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 ANAPC4Q9UJX5 808 aa8.72□□□□□ -1.01
HMGXB4-202ENST00000418170 TRIM33Q9UPN9 1127 aa8.72□□□□□ -1.01
HMGXB4-202ENST00000418170 ARL2BPQ9Y2Y0 163 aa8.72□□□□□ -1.01
HMGXB4-202ENST00000418170 TLDC2A0PJX2 215 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 PDE8BO95263 885 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 LMNB2Q03252 620 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 TNFAIP8L3Q5GJ75 292 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 SPATA21Q7Z572 469 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 SPATA5Q8NB90 893 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 KLHL23Q8NBE8 558 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 FGFR1OP2Q9NVK5 253 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 CTNNAL1Q9UBT7 734 aa8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 ZMYND8Q9ULU4 1186 aaPredicted RBP8.71□□□□□ -1.01
HMGXB4-202ENST00000418170 MYH3P11055 1940 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 COL4A1P02462 1669 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 NUP98P52948 1817 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 LAD1O00515 517 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 MYBL1P10243 752 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 VEGFAP15692 232 aaPredicted RBP8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 AMPD3Q01432 767 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 KLC1Q07866 573 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 KLHL30Q0D2K2 578 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 CUL3Q13618 768 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 ARMC3Q5W041 872 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 CABP7Q86V35 215 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 BICD1Q96G01 975 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 TRIM51Q9BSJ1 452 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 TMEM109Q9BVC6 243 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 TRIM7Q9C029 511 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 AIPL1Q9NZN9 384 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 RPS6KL1Q9Y6S9 549 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 CYP27B1O15528 508 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 ACADSP16219 412 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 POLR2FP61218 127 aaKnown RBP8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 GUF1Q8N442 669 aaKnown RBP8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 FAM81AQ8TBF8 368 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 CNKSR2Q8WXI2 1034 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 UTP4Q969X6 686 aaKnown RBP8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 AK8Q96MA6 479 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 TANGO6Q9C0B7 1094 aa8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 STMN4Q9H169 189 aaPredicted RBP8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 CNOT7Q9UIV1 285 aaKnown RBP8.71□□□□□ -1.02
HMGXB4-202ENST00000418170 BAG3O95817 575 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 PDHA1P08559 390 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 SP100P23497 879 aaPredicted RBP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 KLRC3Q07444 240 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 PARP6Q2NL67 630 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 DUPD1Q68J44 220 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 BTNL9Q6UXG8 535 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 STK32AQ8WU08 396 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 FAM89AQ96GI7 184 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 RBM41Q96IZ5 413 aaKnown RBP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TRIM31Q9BZY9 425 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TRIM4Q9C037 500 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 CNNM1Q9NRU3 951 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 PRKAG3Q9UGI9 489 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 ZBTB12Q9Y330 459 aaPredicted RBP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 SMIM23A6NLE4 172 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 MINDY4BA8MYZ0 360 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TCP11X1B4DZS4 312 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 PEX11AO75192 247 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 UNC5CO95185 931 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TPBGLP0DKB5 382 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 PEX5P50542 639 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 RAD23BP54727 409 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 RAPGEF1Q13905 1077 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 SLC29A2Q14542 456 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TMEM154Q6P9G4 183 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TAOK1Q7L7X3 1001 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 SLFN11Q7Z7L1 901 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TPCN2Q8NHX9 752 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 IFT43Q96FT9 208 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 PAIP2Q9BPZ3 127 aaKnown RBP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 GOPCQ9HD26 462 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TCP11L1Q9NUJ3 509 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 LMCD1Q9NZU5 365 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 SUCLA2Q9P2R7 463 aaPredicted RBP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 STXBP5LQ9Y2K9 1186 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 KIF13BQ9NQT8 1826 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 ARID5AQ03989 594 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TXNRD1Q16881 649 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 FOXR2Q6PJQ5 311 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 PEX26Q7Z412 305 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 ATL2Q8NHH9 583 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 NLRP3Q96P20 1036 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 RPS6KC1Q96S38 1066 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 ERP44Q9BS26 406 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 LSM14BQ9BX40 385 aaKnown RBP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 CHCHD3Q9NX63 227 aaKnown RBP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 CYP39A1Q9NYL5 469 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 TTC7AQ9ULT0 858 aaPredicted RBP8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 PCDHA4Q9UN74 947 aa8.7□□□□□ -1.02
HMGXB4-202ENST00000418170 M0R2N6 131 aa8.69□□□□□ -1.02
HMGXB4-202ENST00000418170 CABP4P57796 275 aa8.69□□□□□ -1.02
HMGXB4-202ENST00000418170 PTENP60484 403 aa8.69□□□□□ -1.02
HMGXB4-202ENST00000418170 TRIM28Q13263 835 aaKnown RBP8.69□□□□□ -1.02
HMGXB4-202ENST00000418170 RASGRF1Q13972 1273 aa8.69□□□□□ -1.02
HMGXB4-202ENST00000418170 ASIC2Q16515 512 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms