RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 DBX1A6NMT0 343 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 DVL2O14641 736 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 SCGB1D2O95969 90 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 MT-CO1P00395 513 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 MYBL2P10244 700 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 IARSP41252 1262 aaKnown RBP6.17□□□□□ -1.42
VPS54-204ENST00000416400 HERVK_113P62684 666 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 PHC1P78364 1004 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 KLF1Q13351 362 aaPredicted RBP6.17□□□□□ -1.42
VPS54-204ENST00000416400 SMAD4Q13485 552 aaKnown RBP6.17□□□□□ -1.42
VPS54-204ENST00000416400 TERF2Q15554 542 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 STK32CQ86UX6 486 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 WDR75Q8IWA0 830 aaKnown RBP6.17□□□□□ -1.42
VPS54-204ENST00000416400 ELF4Q99607 663 aaPredicted RBP6.17□□□□□ -1.42
VPS54-204ENST00000416400 C11orf84Q9BUA3 381 aaPredicted RBP6.17□□□□□ -1.42
VPS54-204ENST00000416400 KRTAP17-1Q9BYP8 105 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 ACSS2Q9NR19 701 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 C14orf119Q9NWQ9 140 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 HSPBP1Q9NZL4 362 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 B3GALT1Q9Y5Z6 326 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 TNKSO95271 1327 aa6.17□□□□□ -1.42
VPS54-204ENST00000416400 ACOT7O00154 380 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 FOXP2O15409 715 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 ITGA1P56199 1179 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 DBPQ10586 325 aaPredicted RBP6.16□□□□□ -1.42
VPS54-204ENST00000416400 PTPN21Q16825 1174 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 LCE1DQ5T752 114 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 GPR158Q5T848 1215 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 CD276Q5ZPR3 534 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 CC2D1AQ6P1N0 951 aaPredicted RBP6.16□□□□□ -1.42
VPS54-204ENST00000416400 ZZZ3Q8IYH5 903 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 CBARPQ8N350 705 aaPredicted RBP6.16□□□□□ -1.42
VPS54-204ENST00000416400 ZNF610Q8N9Z0 462 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 HIPK4Q8NE63 616 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 FNIP1Q8TF40 1166 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 C8orf48Q96LL4 319 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 CDH19Q9H159 772 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 DLL4Q9NR61 685 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 CROTQ9UKG9 612 aa6.16□□□□□ -1.42
VPS54-204ENST00000416400 NOC2LQ9Y3T9 749 aaKnown RBP6.16□□□□□ -1.42
VPS54-204ENST00000416400 C4BPAP04003 597 aaKnown RBP6.15□□□□□ -1.42
VPS54-204ENST00000416400 CYP17A1P05093 508 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 CD40P25942 277 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 SMAD3P84022 425 aaKnown RBP6.15□□□□□ -1.42
VPS54-204ENST00000416400 PFKPQ01813 784 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 LRRC41Q15345 812 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 SMAD2Q15796 467 aaKnown RBP6.15□□□□□ -1.42
VPS54-204ENST00000416400 PRAMEF18Q5VWM3 479 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 RASSF3Q86WH2 238 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 LRRC56Q8IYG6 542 aaPredicted RBP6.15□□□□□ -1.42
VPS54-204ENST00000416400 CHPFQ8IZ52 775 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 LINC00482Q8N8I6 264 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 IGDCC4Q8TDY8 1250 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 DLG3Q92796 817 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 E2F7Q96AV8 911 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 ZSWIM3Q96MP5 696 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 NOX5Q96PH1 765 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 LUC7LQ9NQ29 371 aaKnown RBP6.15□□□□□ -1.42
VPS54-204ENST00000416400 GEMIN8Q9NWZ8 242 aaKnown RBP6.15□□□□□ -1.42
VPS54-204ENST00000416400 NTMQ9P121 344 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 ARHGAP20Q9P2F6 1191 aa6.15□□□□□ -1.42
VPS54-204ENST00000416400 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.14□□□□□ -1.43
VPS54-204ENST00000416400 KDM1AO60341 852 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 CFBP00751 764 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 PLA2G1BP04054 148 aaKnown RBP6.14□□□□□ -1.43
VPS54-204ENST00000416400 CCND1P24385 295 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 PTX3P26022 381 aaPredicted RBP6.14□□□□□ -1.43
VPS54-204ENST00000416400 GLRBP48167 497 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 CAP1Q01518 475 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 LRRC32Q14392 662 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 SKIDA1Q1XH10 827 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 INAVAQ3KP66 663 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 DPP8Q6V1X1 898 aaPredicted RBP6.14□□□□□ -1.43
VPS54-204ENST00000416400 ERCC4Q92889 916 aaPredicted RBP6.14□□□□□ -1.43
VPS54-204ENST00000416400 RELTQ969Z4 430 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 DACT3Q96B18 629 aaPredicted RBP6.14□□□□□ -1.43
VPS54-204ENST00000416400 FUBP3Q96I24 572 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS54-204ENST00000416400 GBP4Q96PP9 640 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 RTFDC1Q9BY42 306 aaPredicted RBP6.14□□□□□ -1.43
VPS54-204ENST00000416400 ZMAT4Q9H898 229 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 EPB41L4AQ9HCS5 686 aaPredicted RBP6.14□□□□□ -1.43
VPS54-204ENST00000416400 SLC39A2Q9NP94 309 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 ZNF180Q9UJW8 692 aa6.14□□□□□ -1.43
VPS54-204ENST00000416400 ZNF839A8K0R7 811 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 SNUPNO95149 360 aaKnown RBP6.13□□□□□ -1.43
VPS54-204ENST00000416400 MMEP08473 750 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 PTGS1P23219 599 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 SDHAP31040 664 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 THBS2P35442 1172 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 FNTBP49356 437 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 SARSP49591 514 aaKnown RBP6.13□□□□□ -1.43
VPS54-204ENST00000416400 TBX4P57082 545 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 SCAND1P57086 179 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 SEC23AQ15436 765 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 ESRP1Q6NXG1 681 aaKnown RBP6.13□□□□□ -1.43
VPS54-204ENST00000416400 LIPIQ6XZB0 460 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 SAPCD2Q86UD0 394 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 PNMA8AQ86V59 439 aaPredicted RBP6.13□□□□□ -1.43
VPS54-204ENST00000416400 NME9Q86XW9 330 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 MYO1HQ8N1T3 1032 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms