RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 NRCAMQ92823 1304 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 PRPF40AO75400 957 aaKnown RBP17.81■□□□□ 0.44
HMGA1-204ENST00000401473 XRCC6P12956 609 aaKnown RBP eCLIP17.81■□□□□ 0.44
HMGA1-204ENST00000401473 RARRES1P49788 294 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 IGBP1P78318 339 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 PPFIA1Q13136 1202 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 GRIK4Q16099 956 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 CALML4Q96GE6 196 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 GOLPH3LQ9H4A5 285 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 BLOC1S4Q9NUP1 217 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 TRMT13Q9NUP7 481 aaKnown RBP17.81■□□□□ 0.44
HMGA1-204ENST00000401473 HPSEQ9Y251 543 aa17.81■□□□□ 0.44
HMGA1-204ENST00000401473 A0A1W2PQ27 194 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 A0A1W2PQ64 194 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 A0A1W2PQD8 194 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 TREHO43280 583 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 TRIM60Q495X7 471 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 MTERF2Q49AM1 385 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 C1orf53Q5VUE5 145 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 FAM167AQ96KS9 214 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 NT5C3AQ9H0P0 336 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 TRPV6Q9H1D0 765 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 CYP26B1Q9NR63 512 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 DNM3Q9UQ16 869 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 KDM3AQ9Y4C1 1321 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 POLR2DO15514 142 aaKnown RBP17.8■□□□□ 0.44
HMGA1-204ENST00000401473 B4GALT4O60513 344 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 PFKFB1P16118 471 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 KLRC1P26715 233 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 NDUFA8P51970 172 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 XKR9Q5GH70 373 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 OTUD6AQ7L8S5 288 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 CDK5RAP3Q96JB5 506 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 CEP170P1Q96L14 293 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 BHMT2Q9H2M3 363 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 ANKEF1Q9NU02 776 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 PCDH10Q9P2E7 1040 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 KCNH3Q9ULD8 1083 aa17.8■□□□□ 0.44
HMGA1-204ENST00000401473 PDE4DIPQ5VU43 2346 aa17.79■□□□□ 0.44
HMGA1-204ENST00000401473 FAM237AA0A1B0GTK4 181 aa17.79■□□□□ 0.44
HMGA1-204ENST00000401473 C17orf102A2RUQ5 167 aa17.79■□□□□ 0.44
HMGA1-204ENST00000401473 E2F4Q16254 413 aa17.79■□□□□ 0.44
HMGA1-204ENST00000401473 ZNF484Q5JVG2 852 aa17.79■□□□□ 0.44
HMGA1-204ENST00000401473 RRAGBQ5VZM2 374 aa17.79■□□□□ 0.44
HMGA1-204ENST00000401473 FAM126BQ8IXS8 530 aa17.79■□□□□ 0.44
HMGA1-204ENST00000401473 CCDC39Q9UFE4 941 aa17.79■□□□□ 0.44
HMGA1-204ENST00000401473 DBR1Q9UK59 544 aaKnown RBP17.79■□□□□ 0.44
HMGA1-204ENST00000401473 MBLAC1A4D2B0 266 aaPredicted RBP17.78■□□□□ 0.44
HMGA1-204ENST00000401473 SLC26A4O43511 780 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 EYA4O95677 639 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 TXLNAP40222 546 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 RTP1P59025 263 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 TLE2Q04725 743 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 ANKRD33Q7Z3H0 272 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 FSIP1Q8NA03 581 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 RASSF8Q8NHQ8 419 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 GBP4Q96PP9 640 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 LMBRD1Q9NUN5 540 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 FAM13BQ9NYF5 915 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 ALPK3Q96L96 1907 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 GOLGA6L4A6NEF3 574 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 RRN3P2A6NIE6 340 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 RBAK-RBAKDNI3L0D1 243 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 PQBP1O60828 265 aaKnown RBP17.78■□□□□ 0.44
HMGA1-204ENST00000401473 CD4P01730 458 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 SLC12A3P55017 1021 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 PTPN11Q06124 597 aaPredicted RBP17.78■□□□□ 0.44
HMGA1-204ENST00000401473 PTGISQ16647 500 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 CSPP1Q1MSJ5 1256 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 MTHFD1LQ6UB35 978 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 KCTD17Q8N5Z5 321 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 MRPS27Q92552 414 aaKnown RBP17.78■□□□□ 0.44
HMGA1-204ENST00000401473 WNT8BQ93098 351 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 PDLIM7Q9NR12 457 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 ATP11BQ9Y2G3 1177 aa17.78■□□□□ 0.44
HMGA1-204ENST00000401473 ARID2Q68CP9 1835 aa17.77■□□□□ 0.44
HMGA1-204ENST00000401473 C22orf31O95567 290 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 PLA2G4BP0C869 781 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 SNW1Q13573 536 aaKnown RBP17.77■□□□□ 0.43
HMGA1-204ENST00000401473 MCM6Q14566 821 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 CCDC73Q6ZRK6 1079 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 SYT2Q8N9I0 419 aaPredicted RBP17.77■□□□□ 0.43
HMGA1-204ENST00000401473 RAD54LQ92698 747 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 DHX58Q96C10 678 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 MTRQ99707 1265 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 DHX33Q9H6R0 707 aaKnown RBP17.77■□□□□ 0.43
HMGA1-204ENST00000401473 POLD4Q9HCU8 107 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 BMP2KQ9NSY1 1161 aaPredicted RBP17.77■□□□□ 0.43
HMGA1-204ENST00000401473 TUBE1Q9UJT0 475 aa17.77■□□□□ 0.43
HMGA1-204ENST00000401473 COL1A2P08123 1366 aa17.76■□□□□ 0.43
HMGA1-204ENST00000401473 IGKV6-21A0A0C4DH24 114 aa17.76■□□□□ 0.43
HMGA1-204ENST00000401473 FAAP100Q0VG06 881 aa17.76■□□□□ 0.43
HMGA1-204ENST00000401473 MKRN4PQ13434 485 aaPredicted RBP17.76■□□□□ 0.43
HMGA1-204ENST00000401473 DRP2Q13474 957 aa17.76■□□□□ 0.43
HMGA1-204ENST00000401473 DHX8Q14562 1220 aaKnown RBP17.76■□□□□ 0.43
HMGA1-204ENST00000401473 LONRF3Q496Y0 759 aa17.76■□□□□ 0.43
HMGA1-204ENST00000401473 ARSHQ5FYA8 562 aa17.76■□□□□ 0.43
HMGA1-204ENST00000401473 RUFY4Q6ZNE9 571 aa17.76■□□□□ 0.43
HMGA1-204ENST00000401473 ENGASEQ8NFI3 743 aa17.76■□□□□ 0.43
HMGA1-204ENST00000401473 TOX2Q96NM4 488 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms