RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ZNF410Q86VK4 478 aa10.15□□□□□ -0.79
UPF2-202ENST00000357604 ZNF397Q8NF99 534 aaPredicted RBP10.15□□□□□ -0.79
UPF2-202ENST00000357604 LEO1Q8WVC0 666 aaPredicted RBP10.15□□□□□ -0.79
UPF2-202ENST00000357604 TUT1Q9H6E5 874 aaKnown RBP10.15□□□□□ -0.79
UPF2-202ENST00000357604 CYP3A7-CYP3A51PA0A087WV96 503 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 COBLO75128 1261 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 BRD1O95696 1058 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 CYP3A7P24462 503 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 CIITAP33076 1130 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 RESTQ13127 1097 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 PPP2R5CQ13362 524 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 NFRKBQ6P4R8 1299 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 C7orf61Q8IZ16 206 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 N4BP1O75113 896 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 SLURP2P0DP57 97 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 AXLP30530 894 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 GJA9P57773 515 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 NLRP4Q96MN2 994 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 PTPN18Q99952 460 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 FTHL17Q9BXU8 183 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 MRPL4Q9BYD3 311 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 CSRNP2Q9H175 543 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 LUC7LQ9NQ29 371 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 SSC5DA1L4H1 1573 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 PRPF6O94906 941 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 HARSP12081 509 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 NOVP48745 357 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 SNX16P57768 344 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 JAG1P78504 1218 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 PRAMEF19Q5SWL8 479 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 SRGAP1Q7Z6B7 1085 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 U2AF1L4Q8WU68 220 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 AIFM3Q96NN9 605 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 UNC93B1Q9H1C4 597 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 C17orf75Q9HAS0 396 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 KIAA1586Q9HCI6 787 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 ZNHIT6Q9NWK9 470 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 GABRQQ9UN88 632 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 MTIF2P46199 727 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 KCNA10Q16322 511 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 EFCAB12Q6NXP0 572 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 ANKRD36BP1Q96IX9 119 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 CTAGE1Q96RT6 745 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 TXNRD2Q9NNW7 524 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 DBR1Q9UK59 544 aaKnown RBP10.14□□□□□ -0.79
UPF2-202ENST00000357604 PCDHB6Q9Y5E3 794 aa10.14□□□□□ -0.79
UPF2-202ENST00000357604 SOWAHBA6NEL2 793 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 FOXP2O15409 715 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 SGPL1O95470 568 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 ZNF286BP0CG31 522 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 PKN1Q16512 942 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 TWF2Q6IBS0 349 aaKnown RBP10.13□□□□□ -0.79
UPF2-202ENST00000357604 PSRC1Q6PGN9 363 aaPredicted RBP10.13□□□□□ -0.79
UPF2-202ENST00000357604 USP38Q8NB14 1042 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 HVCN1Q96D96 273 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 UBE4BO95155 1302 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 POLR2DO15514 142 aaKnown RBP10.13□□□□□ -0.79
UPF2-202ENST00000357604 SLC8A3P57103 927 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 IKBKEQ14164 716 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 C4orf19Q8IY42 314 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 MSANTD4Q8NCY6 345 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 REPS2Q8NFH8 660 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 NPLOC4Q8TAT6 608 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 CLIC4Q9Y696 253 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 TAF6LQ9Y6J9 622 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 MYH8P13535 1937 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 MEIS1O00470 390 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 SRGAP2CP0DJJ0 459 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 SMIM10L2AP0DMW4 78 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 SMIM10L2BP0DMW5 78 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 CCND3P30281 292 aaPredicted RBP10.13□□□□□ -0.79
UPF2-202ENST00000357604 EVX2Q03828 476 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 PPP2R3AQ06190 1150 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 PTK7Q13308 1070 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 ITGA7Q13683 1181 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.13□□□□□ -0.79
UPF2-202ENST00000357604 CYP26B1Q9NR63 512 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 RWDD3Q9Y3V2 267 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 RSPH10B2B2RC85 870 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 CLTBP09497 229 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 RSPH10BP0C881 870 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 BEX3Q00994 111 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 NTRK3Q16288 839 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 KIAA1755Q5JYT7 1200 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 TCERG1LQ5VWI1 586 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 PRMT7Q9NVM4 692 aaPredicted RBP10.13□□□□□ -0.79
UPF2-202ENST00000357604 STK39Q9UEW8 545 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 DDX41Q9UJV9 622 aaKnown RBP10.13□□□□□ -0.79
UPF2-202ENST00000357604 SBF1O95248 1867 aa10.13□□□□□ -0.79
UPF2-202ENST00000357604 SERPINC1P01008 464 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 NASPP49321 788 aaPredicted RBP10.12□□□□□ -0.79
UPF2-202ENST00000357604 SNRPFP62306 86 aaKnown RBP10.12□□□□□ -0.79
UPF2-202ENST00000357604 DYMQ7RTS9 669 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 TBC1D5Q92609 795 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 TRIM44Q96DX7 344 aaPredicted RBP10.12□□□□□ -0.79
UPF2-202ENST00000357604 ARHGAP39Q9C0H5 1083 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 RPF1Q9H9Y2 349 aaKnown RBP10.12□□□□□ -0.79
UPF2-202ENST00000357604 C1orf112Q9NSG2 853 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 K7ERI5 159 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 SMPD1P17405 629 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms