RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 USP49Q70CQ1 688 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 BRAPQ7Z569 592 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 ZFPM1Q8IX07 1006 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 CRACR2BQ8N4Y2 399 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 SDR42E1Q8WUS8 393 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 SMARCC1Q92922 1105 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 CHD7Q9P2D1 2997 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 A0A1W2PQ27 194 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 A0A1W2PQ64 194 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 A0A1W2PQD8 194 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 FOXN1O15353 648 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 PRC1O43663 620 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 KLRC4O43908 158 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 TOM1O60784 492 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 PLEKHA8P1O95397 391 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 GJB6O95452 261 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 MMP1P03956 469 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 MRE11P49959 708 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 EVA1CP58658 441 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 CCZ1BP86790 482 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 CCZ1P86791 482 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 HS1BP3Q53T59 392 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SLC9C2Q5TAH2 1124 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 C16orf86Q6ZW13 317 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 MAGEB6Q8N7X4 407 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 TBC1D16Q8TBP0 767 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SH3RF3Q8TEJ3 882 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 MMTAG2Q9BU76 263 aaKnown RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 PPP1R9AQ9ULJ8 1098 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 STRIP2Q9ULQ0 834 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 MSRB2Q9Y3D2 182 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 TANC1Q9C0D5 1861 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 MYLKQ15746 1914 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 VCANP13611 3396 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 ESYT3A0FGR9 886 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 TLDC2A0PJX2 215 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 B4E1Z4 1266 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 PPP1R12AO14974 1030 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 MBD4O95243 580 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 ITGB7P26010 798 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 POLD1P28340 1107 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 GIPRP48546 466 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 NDUFA8P51970 172 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 PPARAQ07869 468 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 CUL4BQ13620 913 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 CCDC57Q2TAC2 916 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SKOR2Q2VWA4 1001 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 WIPI1Q5MNZ9 446 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 AKNAD1Q5T1N1 836 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 CAVIN1Q6NZI2 390 aaKnown RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 TMED8Q6PL24 325 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 IRF2BP1Q8IU81 584 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 AGGF1Q8N302 714 aaeCLIP2.69□□□□□ -1.982e-11■■■□□ 19
VPS54-202ENST00000354504 IL22RA1Q8N6P7 574 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 DAGLBQ8NCG7 672 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 MBOAT7Q96N66 472 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 CRAMP1Q96RY5 1269 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SRPK1Q96SB4 655 aaKnown RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 CEP44Q9C0F1 390 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 DIAPH3Q9NSV4 1193 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 CHD5Q8TDI0 1954 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 C9IYK1 514 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 DYNC1LI2O43237 492 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 DYRK3O43781 588 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SSBP05455 408 aaKnown RBP eCLIP2.69□□□□□ -1.98
VPS54-202ENST00000354504 SHMT1P34896 483 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 HAND2P61296 217 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 FKBP1AP62942 108 aaKnown RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 GSTM4Q03013 218 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SPIRE1Q08AE8 756 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SLC39A14Q15043 492 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 PPM1JQ5JR12 505 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 TATDN1Q6P1N9 297 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 ELMSAN1Q6PJG2 1045 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 BLOC1S2Q6QNY1 142 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 B3GNT9Q6UX72 402 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 PPFIBP1Q86W92 1011 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 RELL1Q8IUW5 271 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 DMRTC2Q8IXT2 367 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 ZC3H3Q8IXZ2 948 aaKnown RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 SHISA5Q8N114 240 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 RBBP8NLQ8NC74 664 aaPredicted RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 OR6P1Q8NGX9 317 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 RIN3Q8TB24 985 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SH3TC2Q8TF17 1288 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 TRIM11Q96F44 468 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 SEC16BQ96JE7 1060 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 NOL10Q9BSC4 688 aaKnown RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 ZNRF3Q9ULT6 936 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 ANGEL1Q9UNK9 670 aaKnown RBP2.69□□□□□ -1.98
VPS54-202ENST00000354504 PCDHA2Q9Y5H9 948 aa2.69□□□□□ -1.98
VPS54-202ENST00000354504 XDHP47989 1333 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 FRMPD4Q14CM0 1322 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 OBSL1O75147 1896 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 LOC100289279A0A1B0GTE1 492 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 PRAMEF27A3QJZ7 478 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 CHURC1-FNTBB4DL54 471 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 PPP6R2O75170 966 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 GHRHP01286 108 aa2.68□□□□□ -1.98
VPS54-202ENST00000354504 GSTP1P09211 210 aaKnown RBP2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms