RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 TTLL6Q8N841 843 aa16.94■□□□□ 0.3
UPF3B-202ENST00000345865 GAS7O60861 476 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 FTCDO95954 541 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 KCNA3P22001 575 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 MATR3P43243 847 aaKnown RBP eCLIP16.93■□□□□ 0.3
UPF3B-202ENST00000345865 ITIH3Q06033 890 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 GJB7Q6PEY0 223 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 VPS18Q9P253 973 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 FAN1Q9Y2M0 1017 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 MRPL11Q9Y3B7 192 aaKnown RBP16.93■□□□□ 0.3
UPF3B-202ENST00000345865 RGPD3A6NKT7 1758 aaPredicted RBP16.93■□□□□ 0.3
UPF3B-202ENST00000345865 RGPD4Q7Z3J3 1758 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 EIF3JO75822 258 aaKnown RBP16.93■□□□□ 0.3
UPF3B-202ENST00000345865 FAM13AO94988 1023 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 AGBL1Q96MI9 1066 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 CAMKK2Q96RR4 588 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 PSMD1Q99460 953 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 ZNF577Q9BSK1 485 aa16.93■□□□□ 0.3
UPF3B-202ENST00000345865 SLC16A3O15427 465 aaKnown RBP16.92■□□□□ 0.3
UPF3B-202ENST00000345865 TBC1D12O60347 775 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 EPB41P11171 864 aaKnown RBP16.92■□□□□ 0.3
UPF3B-202ENST00000345865 GAP43P17677 238 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 MCM3P25205 808 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 RPL13P26373 211 aaKnown RBP16.92■□□□□ 0.3
UPF3B-202ENST00000345865 INPP5BP32019 993 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 SLC7A5Q01650 507 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 TRAF1Q13077 416 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 KCTD17Q8N5Z5 321 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 PKNOX2Q96KN3 472 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 COL20A1Q9P218 1284 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 HPCAL4Q9UM19 191 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 PACSIN2Q9UNF0 486 aaPredicted RBP16.92■□□□□ 0.3
UPF3B-202ENST00000345865 PCDHGC5Q9Y5F6 944 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 ZNF536O15090 1300 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 FRMPD4Q14CM0 1322 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 SHTN1A0MZ66 631 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 EIF3DO15371 548 aaKnown RBP eCLIP16.92■□□□□ 0.3
UPF3B-202ENST00000345865 PLA2G6O60733 806 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 PHACTR2O75167 634 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 ITGB5P18084 799 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 RXRBP28702 533 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 TNNT3P45378 269 aaPredicted RBP16.92■□□□□ 0.3
UPF3B-202ENST00000345865 NBPF9Q3BBW0 867 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 IQCEQ6IPM2 695 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 RTKN2Q8IZC4 609 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 CCDC102AQ96A19 550 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 SPAG5Q96R06 1193 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 PARVGQ9HBI0 331 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 METTL14Q9HCE5 456 aaKnown RBP16.92■□□□□ 0.3
UPF3B-202ENST00000345865 RBM12Q9NTZ6 932 aaKnown RBP16.92■□□□□ 0.3
UPF3B-202ENST00000345865 MYH11P35749 1972 aa16.92■□□□□ 0.3
UPF3B-202ENST00000345865 SYF2O95926 243 aaKnown RBP16.91■□□□□ 0.3
UPF3B-202ENST00000345865 DNA2P51530 1060 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 ZNF131P52739 623 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 JAM2P57087 298 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 GPS2Q13227 327 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 ZNF720Q7Z2F6 126 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 TXLNBQ8N3L3 684 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 BANK1Q8NDB2 785 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 SELENOOQ9BVL4 669 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 VIPAS39Q9H9C1 493 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 GRID2IPA4D2P6 1211 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 IPO5O00410 1097 aaKnown RBP16.91■□□□□ 0.3
UPF3B-202ENST00000345865 PTGER2P43116 358 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 DGKZQ13574 1117 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 MEI1Q5TIA1 1274 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 GBP6Q6ZN66 633 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 FAM160B2Q86V87 743 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 TEX2Q8IWB9 1127 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 IL31RAQ8NI17 732 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 LXNQ9BS40 222 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 STK32BQ9NY57 414 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 GCNT4Q9P109 453 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 FEM1BQ9UK73 627 aa16.91■□□□□ 0.3
UPF3B-202ENST00000345865 DDX39AO00148 427 aaKnown RBP16.9■□□□□ 0.3
UPF3B-202ENST00000345865 DPEP1P16444 411 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 MAP9Q49MG5 647 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 CCDC181Q5TID7 509 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 FKBP1CQ5VVH2 108 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 DAW1Q8N136 415 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 AENQ8WTP8 325 aaKnown RBP16.9■□□□□ 0.3
UPF3B-202ENST00000345865 RIN2Q8WYP3 895 aaPredicted RBP16.9■□□□□ 0.3
UPF3B-202ENST00000345865 NACC1Q96RE7 527 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 NAGPAQ9UK23 515 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 NFIBO00712 420 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 PRKCIP41743 596 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 AARSP49588 968 aaKnown RBP eCLIP16.9■□□□□ 0.3
UPF3B-202ENST00000345865 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.9■□□□□ 0.3
UPF3B-202ENST00000345865 FAM186BQ8IYM0 893 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 EXOC4Q96A65 974 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 MXRA8Q9BRK3 442 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 WDR11Q9BZH6 1224 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 GOLPH3Q9H4A6 298 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 PKD2L1Q9P0L9 805 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 NENFQ9UMX5 172 aa16.9■□□□□ 0.3
UPF3B-202ENST00000345865 WNT10BO00744 389 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 HSD17B4P51659 736 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 MAP3K10Q02779 954 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 MAPK7Q13164 816 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 GRIPAP1Q4V328 841 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms