RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CYFIP1Q7L576 1253 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 DAW1Q8N136 415 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 ZNF526Q8TF50 670 aaPredicted RBP14.78□□□□□ -0.04
HMGB1-202ENST00000339872 ATP6V0A1Q93050 837 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 MROH8Q9H579 483 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 NMRK2Q9NPI5 230 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 MYH9P35579 1960 aaKnown RBP14.78□□□□□ -0.04
HMGB1-202ENST00000339872 USP27XA6NNY8 438 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 BTBD19C9JJ37 291 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 EIF3DO15371 548 aaKnown RBP eCLIP14.77□□□□□ -0.04
HMGB1-202ENST00000339872 NR2F2P24468 414 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 KCNA1Q09470 495 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 ZC2HC1CQ53FD0 456 aaPredicted RBP14.77□□□□□ -0.04
HMGB1-202ENST00000339872 XKR9Q5GH70 373 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 FKBP15Q5T1M5 1219 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 SWSAP1Q6NVH7 229 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.77□□□□□ -0.04
HMGB1-202ENST00000339872 CNGA4Q8IV77 575 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 GTF3C2Q8WUA4 911 aaPredicted RBP14.77□□□□□ -0.04
HMGB1-202ENST00000339872 BRI3BPQ8WY22 251 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 FIZ1Q96SL8 496 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 TRAF3IP3Q9Y228 551 aa14.77□□□□□ -0.04
HMGB1-202ENST00000339872 KCNJ6P48051 423 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 NPEPPSP55786 919 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 ADAM9Q13443 819 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 VWA3BQ502W6 1294 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 EEPD1Q7L9B9 569 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 CCDC60Q8IWA6 550 aaPredicted RBP14.77□□□□□ -0.05
HMGB1-202ENST00000339872 PANX2Q96RD6 677 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 MPHOSPH6Q99547 160 aaKnown RBP14.77□□□□□ -0.05
HMGB1-202ENST00000339872 PORCNQ9H237 461 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 ANKEF1Q9NU02 776 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 TYW1Q9NV66 732 aaKnown RBP14.77□□□□□ -0.05
HMGB1-202ENST00000339872 TRMT1Q9NXH9 659 aaKnown RBP14.77□□□□□ -0.05
HMGB1-202ENST00000339872 PLXNB2O15031 1838 aa14.77□□□□□ -0.05
HMGB1-202ENST00000339872 MCM3APO60318 1980 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 PDXKO00764 312 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 CALUO43852 315 aaPredicted RBP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 ZNF862O60290 1169 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 DKC1O60832 514 aaKnown RBP eCLIP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 UBA1P22314 1058 aaKnown RBP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 SYCP1Q15431 976 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 E4F1Q66K89 784 aaPredicted RBP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 MIS18BP1Q6P0N0 1132 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 ABHD15Q6UXT9 468 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 STXBP4Q6ZWJ1 553 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 ANO5Q75V66 913 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 ZC3H3Q8IXZ2 948 aaKnown RBP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 CCAR2Q8N163 923 aaKnown RBP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 FGD4Q96M96 766 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 NDST4Q9H3R1 872 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 EFCC1Q9HA90 598 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 SLC45A1Q9Y2W3 748 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 ZMYM2Q9UBW7 1377 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 CETN3O15182 167 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 ARHGAP6O43182 974 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 STX10O60499 249 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 GNA14O95837 355 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 ZNF720Q7Z2F6 126 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 SHCBP1Q8NEM2 672 aa14.76□□□□□ -0.05
HMGB1-202ENST00000339872 C16orf45Q96MC5 204 aaPredicted RBP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 PCMTD1Q96MG8 357 aaPredicted RBP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 LARSQ9P2J5 1176 aaKnown RBP14.76□□□□□ -0.05
HMGB1-202ENST00000339872 UBE4BO95155 1302 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 TRPM7Q96QT4 1865 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 DNAJC25-GNG10A0A024R161 153 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 K7ENM7 598 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 SUPT20HL2P0C7V6 817 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 KLK7P49862 253 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 PRKCEQ02156 737 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 SPRYD7Q5W111 196 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 OTUD6AQ7L8S5 288 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 ANKRD23Q86SG2 305 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 KSR1Q8IVT5 923 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 ANKRD13CQ8N6S4 541 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 GPRC5AQ8NFJ5 357 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 PLXNA1Q9UIW2 1896 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 RNF225M0QZC1 329 aaPredicted RBP14.75□□□□□ -0.05
HMGB1-202ENST00000339872 ZBTB48P10074 688 aaPredicted RBP14.75□□□□□ -0.05
HMGB1-202ENST00000339872 CCNA1P78396 465 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 CCDC51Q96ER9 411 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 CEP170P1Q96L14 293 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 DRC1Q96MC2 740 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 ERGIC2Q96RQ1 377 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 TIPINQ9BVW5 301 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 GPRC5CQ9NQ84 441 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 ABHD10Q9NUJ1 306 aa14.75□□□□□ -0.05
HMGB1-202ENST00000339872 SEPT9Q9UHD8 586 aaPredicted RBP14.75□□□□□ -0.05
HMGB1-202ENST00000339872 IGSF9BQ9UPX0 1349 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 TTC26A0AVF1 554 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 CLIC2O15247 247 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 NR3C1P04150 777 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 TRIM21P19474 475 aaKnown RBP14.74□□□□□ -0.05
HMGB1-202ENST00000339872 MARSP56192 900 aaKnown RBP14.74□□□□□ -0.05
HMGB1-202ENST00000339872 FAM102BQ5T8I3 360 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 IKZF4Q9H2S9 585 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 KCND1Q9NSA2 647 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 PCDHB13Q9Y5F0 798 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 SYNGAP1Q96PV0 1343 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 TGFB1I1O43294 461 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms