RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 FSCBQ5H9T9 825 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 COA7Q96BR5 231 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 ADCY10Q96PN6 1610 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 ARL4AP40617 200 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 E4F1Q66K89 784 aaPredicted RBP18.6■□□□□ 0.57
SYNPO-201ENST00000307662 C16orf87Q6PH81 154 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 SLITRK6Q9H5Y7 841 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 SEPT9Q9UHD8 586 aaPredicted RBP18.6■□□□□ 0.57
SYNPO-201ENST00000307662 DNAJC12Q9UKB3 198 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 CCPG1Q9ULG6 757 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 RGS9BPQ6ZS82 235 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 NUDCD1Q96RS6 583 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 DDX47Q9H0S4 455 aaKnown RBP18.6■□□□□ 0.57
SYNPO-201ENST00000307662 SLC4A7Q9Y6M7 1214 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 ZNF804BA4D1E1 1349 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 FAM187AA6NFU0 413 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 PYGBP11216 843 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 GRAMD1AQ96CP6 724 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 MLXIPLQ9NP71 852 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 SPDYE16A6NNV3 312 aaPredicted RBP18.6■□□□□ 0.57
SYNPO-201ENST00000307662 CYP2E1P05181 493 aaPredicted RBP18.6■□□□□ 0.57
SYNPO-201ENST00000307662 MDH1P40925 334 aaKnown RBP18.6■□□□□ 0.57
SYNPO-201ENST00000307662 CRKLP46109 303 aaKnown RBP18.6■□□□□ 0.57
SYNPO-201ENST00000307662 THOC5Q13769 683 aaKnown RBP18.6■□□□□ 0.57
SYNPO-201ENST00000307662 SPDYE2Q495Y8 402 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 NDE1Q9NXR1 346 aa18.6■□□□□ 0.57
SYNPO-201ENST00000307662 ABCD1P33897 745 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 RANBP1P43487 201 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 OCA2Q04671 838 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 KLHL38Q2WGJ6 581 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 KCTD1Q719H9 257 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 SMYD3Q9H7B4 428 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 FBXL5Q9UKA1 691 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ZBTB1Q9Y2K1 713 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 EIF3HO15372 352 aaKnown RBP eCLIP18.59■□□□□ 0.57
SYNPO-201ENST00000307662 PRPSAP2O60256 369 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 PLEKHA8P1O95397 391 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 CHRNA3P32297 505 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 MKRN3Q13064 507 aaKnown RBP18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ALCAMQ13740 583 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ABCB5Q2M3G0 1257 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 FBXW10Q5XX13 1052 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 SPATA4Q8NEY3 305 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ANO3Q9BYT9 981 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ALDH8A1Q9H2A2 487 aaPredicted RBP18.59■□□□□ 0.57
SYNPO-201ENST00000307662 USP21Q9UK80 565 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ANGPTL3Q9Y5C1 460 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 HECW2Q9P2P5 1572 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ZBTB22O15209 634 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ANKARQ7Z5J8 1434 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ZNF473Q8WTR7 871 aaKnown RBP18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ATP6V1E2Q96A05 226 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 SUFUQ9UMX1 484 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ZBED1O96006 694 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 GPC5P78333 572 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 FAM160B1Q5W0V3 765 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 LCA5Q86VQ0 697 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 WDR19Q8NEZ3 1342 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 A0A1W2PQC6 194 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ARHGAP10A1A4S6 786 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 TLR3O15455 904 aaKnown RBP18.59■□□□□ 0.57
SYNPO-201ENST00000307662 ARFIP2P53365 341 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 BIRC2Q13490 618 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 KRT39Q6A163 491 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 MXD3Q9BW11 206 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 CXorf56Q9H5V9 222 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 SLC38A10Q9HBR0 1119 aa18.59■□□□□ 0.57
SYNPO-201ENST00000307662 DDIT3P35638 169 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 TFDP1Q14186 410 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 FAM161BQ96MY7 647 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 AS3MTQ9HBK9 375 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 BATF3Q9NR55 127 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 PSD3Q9NYI0 1048 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 WDR17Q8IZU2 1322 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 SCNN1DP51172 638 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 UBXN2AP68543 259 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 KIF22Q14807 665 aa18.58■□□□□ 0.57
SYNPO-201ENST00000307662 RBM41Q96IZ5 413 aaKnown RBP18.58■□□□□ 0.57
SYNPO-201ENST00000307662 EIF4E1BA6NMX2 242 aaKnown RBP18.58■□□□□ 0.56
SYNPO-201ENST00000307662 KRT38O76015 456 aa18.58■□□□□ 0.56
SYNPO-201ENST00000307662 TBC1D10BQ4KMP7 808 aaPredicted RBP18.58■□□□□ 0.56
SYNPO-201ENST00000307662 IQGAP3Q86VI3 1631 aa18.58■□□□□ 0.56
SYNPO-201ENST00000307662 IRX1P78414 480 aaPredicted RBP18.58■□□□□ 0.56
SYNPO-201ENST00000307662 IQCB1Q15051 598 aa18.58■□□□□ 0.56
SYNPO-201ENST00000307662 FAM83BQ5T0W9 1011 aa18.58■□□□□ 0.56
SYNPO-201ENST00000307662 CEP19Q96LK0 163 aa18.58■□□□□ 0.56
SYNPO-201ENST00000307662 PIH1D3Q9NQM4 214 aaKnown RBP18.58■□□□□ 0.56
SYNPO-201ENST00000307662 DCTN4Q9UJW0 460 aa18.58■□□□□ 0.56
SYNPO-201ENST00000307662 HEG1Q9ULI3 1381 aa18.58■□□□□ 0.56
SYNPO-201ENST00000307662 MTF1Q14872 753 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 ANO5Q75V66 913 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 FAF2Q96CS3 445 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 KIFC3Q9BVG8 833 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 ANAPC7Q9UJX3 599 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 NOC2LQ9Y3T9 749 aaKnown RBP18.57■□□□□ 0.56
SYNPO-201ENST00000307662 SLC16A2P36021 539 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 LRRC14Q15048 493 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 TRPC5Q9UL62 973 aaPredicted RBP18.57■□□□□ 0.56
SYNPO-201ENST00000307662 RPAP1Q9BWH6 1393 aaPredicted RBP18.57■□□□□ 0.56
SYNPO-201ENST00000307662 ABCC3O15438 1527 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms