RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 GSTT2BP0CG30 244 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 IARSP41252 1262 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 AFMP43652 599 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 EMP3P54852 163 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 CYP4A11Q02928 519 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 MECOMQ03112 1051 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 SPAG1Q07617 926 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 MTMR3Q13615 1198 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 CUL1Q13616 776 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 KLHL7Q8IXQ5 586 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 IFIH1Q9BYX4 1025 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 LARSQ9P2J5 1176 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 ZNF148Q9UQR1 794 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 ARL2BPQ9Y2Y0 163 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 PCDHA13Q9Y5I0 950 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 N6AMT1Q9Y5N5 214 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 N4BP2Q86UW6 1770 aaPredicted RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 E7EWF7 191 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 O00370 1275 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 PLEKP08567 350 aaPredicted RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 CDK7P50613 346 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 NEK2P51955 445 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 BCL2A1Q16548 175 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 KHDC1Q4VXA5 237 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 WASHC2DQ5SRD0 308 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 DZIP1Q86YF9 867 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 TREML1Q86YW5 311 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 FAM133AQ8N9E0 248 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 RBM46Q8TBY0 533 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 DQX1Q8TE96 717 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 USP33Q8TEY7 942 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 RAPGEF4Q8WZA2 1011 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 TAF4BQ92750 862 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 NMD3Q96D46 503 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 TMEM237Q96Q45 408 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 LRMDAQ9H2I8 198 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 METTL5Q9NRN9 209 aaKnown RBP9.97□□□□□ -0.81
PDGFC-201ENST00000274071 BTBD7Q9P203 1132 aa9.97□□□□□ -0.81
PDGFC-201ENST00000274071 NPHP3-ACAD11A0A0J9YXS1 232 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 ECE2O60344 883 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 HOXB7P09629 217 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 PABPC4LP0CB38 370 aaKnown RBP9.96□□□□□ -0.81
PDGFC-201ENST00000274071 DNA2P51530 1060 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 USP11P51784 963 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 MGAT5Q09328 741 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 CAMK2BQ13554 666 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 RCN1Q15293 331 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 CHRNA2Q15822 529 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 GSTA3Q16772 222 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 PACS1Q6VY07 963 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 TMC3Q7Z5M5 1100 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 ANKRD13CQ8N6S4 541 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 SH3TC2Q8TF17 1288 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 CCDC42Q96M95 316 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 HNRNPABQ99729 332 aaKnown RBP9.96□□□□□ -0.81
PDGFC-201ENST00000274071 CENPOQ9BU64 300 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 CCDC28BQ9BUN5 200 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 DHX36Q9H2U1 1008 aaKnown RBP9.96□□□□□ -0.81
PDGFC-201ENST00000274071 TUT1Q9H6E5 874 aaKnown RBP9.96□□□□□ -0.81
PDGFC-201ENST00000274071 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.96□□□□□ -0.81
PDGFC-201ENST00000274071 PAG1Q9NWQ8 432 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 CHPF2Q9P2E5 772 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 PRKAG3Q9UGI9 489 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 HPS5Q9UPZ3 1129 aa9.96□□□□□ -0.81
PDGFC-201ENST00000274071 CPLX1O14810 134 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 PTPREP23469 700 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 TXKP42681 527 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 IFI35P80217 286 aaPredicted RBP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 LMNB2Q03252 620 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 GIT2Q14161 759 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 R3HDM1Q15032 1099 aaKnown RBP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 CCDC152Q4G0S7 254 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 TMEM259Q4ZIN3 620 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 EAPPQ56P03 285 aaPredicted RBP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 KRT40Q6A162 431 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 MARK2Q7KZI7 788 aaKnown RBP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 AGGF1Q8N302 714 aaeCLIP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 ZNF507Q8TCN5 953 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 DYDC2Q96IM9 177 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 STK32BQ9NY57 414 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 FBXO2Q9UK22 296 aaPredicted RBP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 SPATA31A3Q5VYP0 1347 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 MYPNQ86TC9 1320 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 KDM3BQ7LBC6 1761 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 A0A1W2PQC6 194 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 TCP11X1B4DZS4 312 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 WDR46O15213 610 aaKnown RBP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 SPTLC1O15269 473 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 BIRC5O15392 142 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 CDK4P11802 303 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 CCDC6Q16204 474 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 WDR72Q3MJ13 1102 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 MCMDC2Q4G0Z9 681 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 ARHGAP27Q6ZUM4 889 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 DIS3LQ8TF46 1054 aaKnown RBP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 TBC1D10AQ9BXI6 508 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 ASCC2Q9H1I8 757 aaPredicted RBP9.96□□□□□ -0.82
PDGFC-201ENST00000274071 CLIC5Q9NZA1 410 aa9.96□□□□□ -0.82
PDGFC-201ENST00000274071 TNS3Q68CZ2 1445 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms