RNA–Protein interactions for RNA: YPL004C

LSP1, Transcript of Eisosome core component, yeast

Gene LSP1, Length 1,026 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LSP1	YPL004C	ARF3	P40994	183 aa	RIP-Chip data	7.38	□□□□□ -1.23	not detected
LSP1	YPL004C	BIT61	P47041	543 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	TOM22	P49334	152 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	MPA43	P53583	542 aa	Predicted RBP	7.38	□□□□□ -1.23
LSP1	YPL004C	SPC2	Q04969	178 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	ENT2	Q05785	613 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	YPL225W	Q08971	146 aa	Known RBP	7.38	□□□□□ -1.23
LSP1	YPL004C	WTM1	Q12363	437 aa	Known RBP	7.38	□□□□□ -1.23
LSP1	YPL004C	MMP1	Q12372	583 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	ADF1	Q2V2Q1	113 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	MHF2	Q3E829	80 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	MDM12	Q92328	271 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	YOS9	Q99220	542 aa		7.38	□□□□□ -1.23
LSP1	YPL004C	RAD7	P06779	565 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	KAE1	P36132	386 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	RIB1	P38066	345 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	YBR241C	P38142	488 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	OM14	P38325	134 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	GID8	P40208	455 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	SHR5	P41912	237 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	YGR201C	P42936	225 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	VPS73	P53142	486 aa	Known RBP	7.37	□□□□□ -1.23
LSP1	YPL004C	DSL1	P53847	754 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	SKI8	Q02793	397 aa	Predicted RBP	7.37	□□□□□ -1.23
LSP1	YPL004C	NAN1	Q02931	896 aa	Known RBP	7.37	□□□□□ -1.23
LSP1	YPL004C	NAT4	Q04751	285 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	GPI11	Q06636	219 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	DCI1	Q08558	271 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	ULA1	Q12059	462 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	PSF1	Q12488	208 aa		7.37	□□□□□ -1.23
LSP1	YPL004C	MF(ALPHA)1	P01149	165 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	AI1	P03875	834 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	SAC7	P17121	654 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	DBP3	P20447	523 aa	Known RBP	7.36	□□□□□ -1.23
LSP1	YPL004C	PEX3	P28795	441 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	SNU114	P36048	1008 aa	Known RBP	7.36	□□□□□ -1.23
LSP1	YPL004C	DIM1	P41819	318 aa	Known RBP	7.36	□□□□□ -1.23
LSP1	YPL004C	IRC6	P43615	237 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	NOP9	P47077	666 aa	Known RBP	7.36	□□□□□ -1.23
LSP1	YPL004C	HOL1	P53389	586 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	SWP1	Q02795	286 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	NCE101	Q02820	53 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	ATG21	Q02887	496 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	RSC9	Q03124	581 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	YDR209C	Q03480	137 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	RIM13	Q03792	727 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	PEX12	Q04370	399 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	CYK3	Q07533	885 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	SFM1	Q12314	213 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	YDL199C	Q12407	687 aa		7.36	□□□□□ -1.23
LSP1	YPL004C	PFK27	Q12471	397 aa	Predicted RBP	7.36	□□□□□ -1.23
LSP1	YPL004C	RPS21B	Q3E754	87 aa	Known RBP	7.36	□□□□□ -1.23
LSP1	YPL004C	IPP1	P00817	287 aa	Known RBP	7.35	□□□□□ -1.23
LSP1	YPL004C	KSS1	P14681	368 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	SEC2	P17065	759 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	ARP2	P32381	391 aa	Known RBP	7.35	□□□□□ -1.23
LSP1	YPL004C	EMP70	P32802	667 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	TOD6	P34219	525 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	PDX3	P38075	228 aa	Known RBP	7.35	□□□□□ -1.23
LSP1	YPL004C	MOH1	P38191	138 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	BIG1	P38813	335 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	7.35	□□□□□ -1.23	not detected
LSP1	YPL004C	MPM1	P40364	252 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	SMK1	P41808	388 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	YNL095C	P53932	642 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	SPR6	Q01684	191 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	ATP25	Q03153	612 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	PRP46	Q12417	451 aa	Predicted RBP	7.35	□□□□□ -1.23
LSP1	YPL004C	TAD3	Q9URQ3	322 aa		7.35	□□□□□ -1.23
LSP1	YPL004C	RPL7A	P05737	244 aa	Known RBP	7.34	□□□□□ -1.23
LSP1	YPL004C	GPH1	P06738	902 aa	Known RBP	7.34	□□□□□ -1.23
LSP1	YPL004C	REC107	P21651	314 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	DPH5	P32469	300 aa	Predicted RBP	7.34	□□□□□ -1.23
LSP1	YPL004C	LOT5	P34234	306 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	MCM7	P38132	845 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	SOL3	P38858	249 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	RBG1	P39729	369 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	CIN1	P40987	1014 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	SNM1	P40993	198 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	EMC2	P47133	292 aa	Known RBP	7.34	□□□□□ -1.23
LSP1	YPL004C	YGL260W	P53056	76 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	TWF1	P53250	332 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	MTQ1	P53944	314 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	YPL107W	Q02873	248 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	CTL1	Q03220	320 aa	Known RBP	7.34	□□□□□ -1.23
LSP1	YPL004C	INP1	Q03694	420 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	ARO10	Q06408	635 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	YOR342C	Q12182	319 aa		7.34	□□□□□ -1.23
LSP1	YPL004C	RPL7B	Q12213	244 aa	Known RBP	7.34	□□□□□ -1.23
LSP1	YPL004C	FLP1	P03870	423 aa		7.33	□□□□□ -1.24
LSP1	YPL004C	CDC9	P04819	755 aa		7.33	□□□□□ -1.24
LSP1	YPL004C	CYT1	P07143	309 aa		7.33	□□□□□ -1.24
LSP1	YPL004C	ARF1	P11076	181 aa	Known RBP	7.33	□□□□□ -1.24
LSP1	YPL004C	DAT1	P13483	248 aa	Known RBP	7.33	□□□□□ -1.24
LSP1	YPL004C	KGD1	P20967	1014 aa	Known RBP	7.33	□□□□□ -1.24
LSP1	YPL004C	CWH43	P25618	953 aa		7.33	□□□□□ -1.24
LSP1	YPL004C	PHB1	P40961	287 aa		7.33	□□□□□ -1.24
LSP1	YPL004C	GPI8	P49018	411 aa		7.33	□□□□□ -1.24
LSP1	YPL004C	DBP6	P53734	629 aa	Known RBP	7.33	□□□□□ -1.24
LSP1	YPL004C	YDR541C	Q03049	344 aa		7.33	□□□□□ -1.24

Retrieved 100 of 5,963 RNA–protein pairs in 18.7 ms